PDBsum provides service that users can upload their calculated structures for analysis including ramachandran plot, sequence+secondary structural element, etc. The figure below is an example. For self-generated structures, users need to click the link “generate” to upload your PDB files. To know the structural information of published biomolecules at Protein Data Bank, just type the [...]
[NMR paper] Structural analysis of the extracellular domain of vaccinia virus envelope protein, A
Structural analysis of the extracellular domain of vaccinia virus envelope protein, A27L, by NMR and CD spectroscopy.
Related Articles Structural analysis of the extracellular domain of vaccinia virus envelope protein, A27L, by NMR and CD spectroscopy.
J Biol Chem. 2002 Jun 7;277(23):20949-59
Authors: Lin TH, Chia CM, Hsiao JC, Chang W, Ku CC, Hung SC, Tzou DL
This study presents the molecular structure of the extracellular domain of vaccinia virus envelope protein, A27L, determined by NMR and CD spectroscopy. A recombinant protein, eA27L-aa,...
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11-24-2010 08:49 PM
[NMR paper] Local structural plasticity of the prion protein. Analysis of NMR relaxation dynamics
Local structural plasticity of the prion protein. Analysis of NMR relaxation dynamics.
Related Articles Local structural plasticity of the prion protein. Analysis of NMR relaxation dynamics.
Biochemistry. 2001 Mar 6;40(9):2743-53
Authors: Viles JH, Donne D, Kroon G, Prusiner SB, Cohen FE, Dyson HJ, Wright PE
A template-assisted conformational change of the cellular prion protein (PrP(C)) from a predominantly helical structure to an amyloid-type structure with a higher proportion of beta-sheet is thought to be the causative factor in prion...
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11-19-2010 08:32 PM
NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental
NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints.
Related Articles NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints.
Nucleic Acids Res. 2010 Jul 1;38 Suppl:W628-32
Authors: Heller DM, Giorgetti A
Nuclear magnetic resonance (NMR) spectroscopy together with X-ray crystallography, are the main techniques used for the determination of high-resolution 3D structures of biological molecules. The output of an NMR experiment includes a set of lower and upper...
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09-29-2010 06:26 PM
MOBI: a web server to define and visualize structural mobility in NMR protein ensembl
MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.
Related Articles MOBI: a web server to define and visualize structural mobility in NMR protein ensembles.
Bioinformatics. 2010 Sep 21;
Authors: Martin AJ, Walsh I, Tosatto SC
MOTIVATION: MOBI is a web server for the identification of structurally mobile regions in NMR protein ensembles. It provides a binary mobility definition that is analogous to the commonly used definition of intrinsic disorder in X-ray crystallographic structures. At least three...
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09-24-2010 04:57 PM
[NMR paper] Protein structural analysis from solid-state NMR-derived orientational constraints.
Protein structural analysis from solid-state NMR-derived orientational constraints.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Protein structural analysis from solid-state NMR-derived orientational constraints.
Biophys J. 1997 May;72(5):2342-8
Authors: Quine JR, Brenneman MT, Cross TA
High-resolution orientational constraints from solid-state NMR...
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08-22-2010 03:31 PM
[NMR paper] Protein structural analysis from solid-state NMR-derived orientational constraints.
Protein structural analysis from solid-state NMR-derived orientational constraints.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Protein structural analysis from solid-state NMR-derived orientational constraints.
Biophys J. 1997 May;72(5):2342-8
Authors: Quine JR, Brenneman MT, Cross TA
High-resolution orientational constraints from solid-state NMR...
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08-22-2010 03:03 PM
[NMR paper] Structural determinants of protein dynamics: analysis of 15N NMR relaxation measureme
Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.
Related Articles Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.
Biochemistry. 1995 Mar 28;34(12):4041-55
Authors: Buck M, Boyd J, Redfield C, MacKenzie DA, Jeenes DJ, Archer DB, Dobson CM
15N-labeled hen lysozyme has been studied by 2D and 3D NMR in order to characterize its dynamic...
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08-22-2010 03:41 AM
[NMR paper] Subunit association and structural analysis of platelet basic protein and related pro
Subunit association and structural analysis of platelet basic protein and related proteins investigated by 1H NMR spectroscopy and circular dichroism.
Related Articles Subunit association and structural analysis of platelet basic protein and related proteins investigated by 1H NMR spectroscopy and circular dichroism.
J Biol Chem. 1994 Aug 5;269(31):20110-8
Authors: Yang Y, Mayo KH, Daly TJ, Barry JK, La Rosa GJ
Platelet basic protein (PBP) (94 residues) is naturally processed via N-terminal cleavage to yield connective tissue activating...
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[web server] protein structural analysis
Linear Mode
