Here is a nice script to draw a minimu bounding box of your target PDB. Author: Jason Vertrees Example of 2GB1, using stereo view: usage: run PATH/drawMinBoundingBox.py drawMinBoundingBox.py 2GB1, 3, r=0.3, g=0.3, b=0.3 ====== drawMinBoundingBox [selection, [lineWidth, [redColor, [greenColor, [blueColor]]]]] Download this script at pymolwiki.
Protein Structures Give Disease Clues - Bioscience Technology
<img alt="" height="1" width="1" />
Protein Structures Give Disease Clues
Bioscience Technology
Using some of the most powerful nuclear magnetic resonance equipment available, researchers at the University of California, Davis, are making discoveries about the shape and structure of biological molecules â?? potentially leading to new ways to treat ...
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Protein Structures Give Disease Clues - Bioscience Technology
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nmrlearner
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02-02-2012 09:43 PM
Protein structures give disease clues - PhysOrg.com
http://www.bionmr.com//nt3.ggpht.com/news/tbn/g9e-lmEezPWQKM/6.jpg
PhysOrg.com
<img alt="" height="1" width="1" />
Protein structures give disease clues
PhysOrg.com
Credit: James Ames, UC Davis Using some of the most powerful nuclear magnetic resonance equipment available, researchers at the University of California, Davis, are making discoveries about the shape and structure of biological molecules -- potentially ...
and more »
Protein structures give disease clues - PhysOrg.com
Protein structures give disease clues - EurekAlert (press release)
<img alt="" height="1" width="1" />
Protein structures give disease clues
EurekAlert (press release)
Using some of the most powerful nuclear magnetic resonance equipment available, researchers at the University of California, Davis, are making discoveries about the shape and structure of biological molecules -- potentially leading to new ways to treat ...
and more »
Protein structures give disease clues - EurekAlert (press release)
More...
nmrlearner
Online News
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02-01-2012 09:28 PM
[KPWU blog] [PyMOL] DNA?example II
DNA?example II
Follow up previous post, here shows several modes available in PyMOL to display the ribbon/chain of DNA/RNA. Example molecule: B-form DNA PDB code: *2L8Q Running version, PyMOL 1.3 (x11 version on MacOS 10.6) The previous version use “oval” to show the ribbon of DNA. Here are some other ways to show the ribbon: 1. default http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=446&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
nmrlearner
News from NMR blogs
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07-28-2011 11:40 PM
[KPWU blog] [PyMOL] example of DNA
example of DNA
Several private emails request me to show some examples of DNA/RNA using PyMOL. I am not familiar with commands related to nucleic acids in PyMOL because I never have chance to study DNA/RNA. I made some posts few years ago just for fun. Here is a step-by-step re-cap I make followed by our old post. http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=429&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
nmrlearner
News from NMR blogs
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07-26-2011 11:22 PM
[KPWU blog] [PyMOL] use of ?ray_trace_mode?
use of ?ray_trace_mode?
I do like a command called “ray_trace_mode” in PyMOL because different modes can generate different light and color effects on the structure I want to express to readers/students. Here is a quick examples of the effect on different modes. The structure I use at here is LolA which PDB code is 1UA8. 1. ray_trace_mode 0 http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=407&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.