[NMR] PhD Position - Uni Leipzig - Solid-state NMR on photoreceptor protein

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[NMR] PhD Position - Uni Leipzig - Solid-state NMR on photoreceptor protein

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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11-29-2015, 03:27 PM

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[NMR] PhD Position - Uni Leipzig - Solid-state NMR on photoreceptor protein

From The DNP-NMR Blog:

[NMR] PhD Position - Uni Leipzig - Solid-state NMR on photoreceptor protein

From the Ampere Magnetic Resonance List

PhD Position - Uni Leipzig - Solid-state NMR on photoreceptor protein

The Institute of Analytical Chemistry at the University of Leipzig invites applications for a PhD position in the field of solid-state NMR characterization of photoreceptors. To be appointed from 01.02.16 or later. The position is limited to 3 years.

The NMR research group of Jörg Matysik works on the development of hyperpolarization and optical NMR techniques for studying photo/spin-chemically relevant systems. The successful candidate will work on an interdisciplinary research project combining biochemical work and solid-state NMR spectroscopy. This DFG financed project aims for understanding of the electronic orbital structure of the chromophore in photoreceptors of the phytochrome family.

The candidate should hold a MSc degree and be highly motivated with a strong interest in protein chemistry and biophysics. Previous experience biochemistry of proteins and is desirable. Experience in the field of magnetic resonance spectroscopy is of advantage.

For further information, please contact Jörg Matysik,
joerg.matysik@uni-leipzig.de.

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