When I use CSRosetta 3.1 on my iMac, I always meet an error that the runCSrescore3.com can’t work properly. The best_model is not selected, therefore the script doesn’t generate a 3-column name.rms.rescore.txt at the end. I might find where the bug is although it’s quite confused to me. 1. The extract_pdb3.com used in runCSrescore3.com contains [...]
[Question from NMRWiki Q&A forum] Chemical exchange of Tyr residues - what information can be found about dynamics?
Chemical exchange of Tyr residues - what information can be found about dynamics?
I have an aromatic spectrum of Tyr residues in p53 DNA binding domain. No peaks are seen for Tyr-205 at high temp, but as temp decreases 4 peaks are shown. Tyr-163 and Tyr-236 show two peak each at high temps. How come there aren't 4 peaks? The dynamic processes are said to occur on different time scales. What is the interpretation of this information? How is the core domain of p53 influenced by this? Thanks for your help!
Check if somebody has answered this question on NMRWiki QA forum
nmrlearner
News from other NMR forums
0
04-11-2011 12:48 AM
Common 'chaperone' protein found to work in surprising way, say Scripps ... - EurekAlert (press release)
Common 'chaperone' protein found to work in surprising way, say Scripps ... - EurekAlert (press release)
<img alt="" height="1" width="1" />
Common 'chaperone' protein found to work in surprising way, say Scripps ...
EurekAlert (press release)
"None of these studies was able to pinpoint either what the client protein looked like in the complex or what part of Hsp90 was contacting the client." In the new study, the team used protein nuclear magnetic resonance (NMR) spectroscopy; ...
and more »
Read here
[CNS Yahoo group] Re: CNS: Command not found
Re: CNS: Command not found
Indeed - I should have tried to run plain cns command myself before jumping in... apologies. Maybe this from "Getting started" is helpful ... so I guess it's
More...
nmrlearner
News from other NMR forums
0
12-18-2010 01:31 AM
[CNS Yahoo group] Re: CNS: Command not found
Re: CNS: Command not found
... You didn't get an error message right there so you we know you're running (t)csh and the syntax of the cns_solve_env file is correct. To check that your
More...
nmrlearner
News from other NMR forums
0
12-17-2010 12:55 PM
[CNS Yahoo group] Re: CNS: Command not found
Re: CNS: Command not found
Reading the manual is always a good idea. However, you should be able to type "cns" at the command prompt and start up an interactive CNS session. Assuming
More...
nmrlearner
News from other NMR forums
0
12-17-2010 12:50 AM
[CNS Yahoo group] Re: CNS: Command not found
Re: CNS: Command not found
One suggestion is to rtfm. The basic command is cns_solve, not cns, and you'd have to provide it with the input file, etc. ... -- "I'd jump in myself, if I
More...
nmrlearner
News from other NMR forums
0
12-17-2010 12:50 AM
[CNS Yahoo group] CNS: Command not found
CNS: Command not found
Need Help!! Downloaded the latest ver 1.3 to install on mac 10.6.5. When I type nwil10% source cns_solve_env
More...