BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 04-01-2022, 03:04 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default XPS and NMR analyze the combined forms of Pb in Cladophora rupestris subcells and its detoxification

XPS and NMR analyze the combined forms of Pb in Cladophora rupestris subcells and its detoxification

In this study, the combined forms of Pb in Cladophora rupestris (L.) (C. rupestris) were investigated via X-ray photoelectron spectroscopy (XPS) and nuclear magnetic resonance (NMR), different Pb concentrations (0, 0.5, and 5.0 mg/L), and C. rupestris subcells were explored. Results showed that combined forms of Pb mainly account for Pb-polysaccharides (Pb-OH of carbohydrates) in the cell wall, Pb-protein (Pb-N= and (C-N-)(2)Pb) in the organelle, and Pb-organic acid (Pb-sulfates, (CO)(2)-Pb and...

More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
Pressure control helps NMR analyze protein as it folds - Chemical & Engineering News
Pressure control helps NMR analyze protein as it folds - Chemical & Engineering News Pressure control helps NMR analyze protein as it folds Chemical & Engineering NewsResearchers have long wanted to better understand the way an unfolded protein chain reaches its final folded structure. But experimental tools needed to probe ... Read here
nmrlearner Online News 0 01-07-2019 05:49 AM
[NMR paper] Backbone NMR assignments of tryparedoxin, the central protein in the hydroperoxide detoxification cascade of African trypanosomes, in the oxidized and reduced form.
Backbone NMR assignments of tryparedoxin, the central protein in the hydroperoxide detoxification cascade of African trypanosomes, in the oxidized and reduced form. Related Articles Backbone NMR assignments of tryparedoxin, the central protein in the hydroperoxide detoxification cascade of African trypanosomes, in the oxidized and reduced form. Biomol NMR Assign. 2017 Jun 01;: Authors: Wagner A, Diehl E, Krauth-Siegel RL, Hellmich UA Abstract Tryparedoxin (Tpx) is a pivotal protein in the redox-metabolism of trypanosomatid...
nmrlearner Journal club 0 06-03-2017 11:49 AM
[NMR paper] DIADECOMP: A new approach to analyze decompositions from projection spectroscopy
DIADECOMP: A new approach to analyze decompositions from projection spectroscopy Publication date: December 2016 Source:Journal of Magnetic Resonance, Volume 273</br> Author(s): Jonas Fredriksson, Viviane S. de Paula, Ana Paula Valente, Fabio C.L. Almeida, Martin Billeter</br> We demonstrate for the first time a complete small protein characterization with the projection-decomposition approach, including full assignments as well as determination of the 3D fold. In TOCSY- and NOESY-type 4D experiments, pairing of signals from hydrogens and from their...
nmrlearner Journal club 0 11-19-2016 08:35 PM
New technique to analyze conformations of complex molecular machines - Phys.Org
http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcRo1TkQ4r1fMpUxa3wD5SK2d2V8T_oG2l78aZVQEcL_XDMCV_pyy0Biarzf0xAik6wok_0CyH8 Phys.Org <img alt="" height="1" width="1" /> New technique to analyze conformations of complex molecular machines Phys.Org "Structural techniques like X-ray crystallography and nuclear magnetic resonance have worked quite well to help us understand how smaller proteins function," Onuchic said. X-rays only take snapshots of constantly moving proteins, he said, "but ... and more &raquo; New technique to analyze conformations of complex molecular machines...
nmrlearner Online News 0 03-14-2014 07:34 PM
Proton NMR - How To Analyze The Peaks Of H-NMR Spectroscopy
Proton NMR - How To Analyze The Peaks Of H-NMR Spectroscopy http://i.ytimg.com/vi/k0eR8YqcA8c/default.jpg Proton NMR - How To Analyze The Peaks Of H-NMR Spectroscopy Download My ebook: "10 Secrets To Acing Organic Chemistry" forms.aweber.com leah4sci.com Presents: H-NMR How To Analyze Peaks This video takes you through the four key aspects you need to understand when interpreting the peaks of an H-NMR graph - Number and type of unique hydrogen - splitting of peaks - hydrogen neighbors - chemical shifts Future videos will take you through specific NMR problems and solving techniques...
nmrlearner NMR educational videos 0 02-27-2013 06:45 AM
[NMR paper] An advantage for use of isotope labeling and NMR chemical shifts to analyze the struc
An advantage for use of isotope labeling and NMR chemical shifts to analyze the structure of four homologous IgG-binding domains of staphylococcal protein A. Related Articles An advantage for use of isotope labeling and NMR chemical shifts to analyze the structure of four homologous IgG-binding domains of staphylococcal protein A. J Biochem Biophys Methods. 2000 Jan 3;42(1-2):35-47 Authors: Kikuchi J, Asakura T, Hasuda K, Ito T, Ohwaku K, Araki H, Williamson MP Because of the complexity arising from the large molecular size and the amino acid...
nmrlearner Journal club 0 11-18-2010 09:15 PM
[Question from NMRWiki Q&A forum] How to process and analyze serial 1D data nmrPipe?
How to process and analyze serial 1D data nmrPipe? Hi all,I am very new to nmrPipe. I want to achieve the following steps. It would be very kind if somebody helps. I have a 2D bruker data (t2= 4k points, t1= 32 points) and I want to do Fourier transform in the F2 dimension,phase etc. (2) and then extract the 32 spectra as 1Ds and also convert these 32 spectra in ascii format.(3) fit the peaks with a gaussian or Lorentzian function.(4) integrate the peak and save the integrals and time points as an ascii file. I only managed till the 1st step.Please help..!!
nmrlearner News from other NMR forums 0 10-28-2010 09:14 PM
[NMR paper] Use of 1H NMR spectroscopy and computer simulations To analyze histidine pKa changes
Use of 1H NMR spectroscopy and computer simulations To analyze histidine pKa changes in a protein tyrosine phosphatase: experimental and theoretical determination of electrostatic properties in a small protein. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Use of 1H NMR spectroscopy and computer simulations To analyze histidine pKa changes in a protein tyrosine phosphatase: experimental and theoretical determination of electrostatic properties in a small protein. Biochemistry. 1997 Sep 30;36(39):11984-94 ...
nmrlearner Journal club 0 08-22-2010 05:08 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 06:48 AM.


Map