NMR paper Understanding the Interaction of Polyelectrolyte Architectures with Proteins and Biosystems

		BioNMR > Educational resources > Journal club
[NMR paper] Understanding the Interaction of Polyelectrolyte Architectures with Proteins and Biosystems

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-28-2020, 12:41 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Understanding the Interaction of Polyelectrolyte Architectures with Proteins and Biosystems

Understanding the Interaction of Polyelectrolyte Architectures with Proteins and Biosystems

Angewandte Chemie International Edition, EarlyView.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Understanding the Activated Form of a Class-I Fusion Protein: Modeling the Interaction of the Ebola Virus Glycoprotein 2 with a Lipid Bilayer Understanding the Activated Form of a Class-I Fusion Protein: Modeling the Interaction of the Ebola Virus Glycoprotein 2 with a Lipid Bilayer https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.0c00527/20201001/images/medium/bi0c00527_0005.gif Biochemistry DOI: 10.1021/acs.biochem.0c00527 http://feeds.feedburner.com/~r/acs/bichaw/~4/qeokQaNm2jc More...	nmrlearner	Journal club	0	10-04-2020 05:33 AM
Systems Approaches to Understanding and DesigningAllosteric Proteins Systems Approaches to Understanding and DesigningAllosteric Proteins http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b01094/20180108/images/medium/bi-2017-01094b_0003.gif Biochemistry DOI: 10.1021/acs.biochem.7b01094 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/7gOIa9twib4 More...	nmrlearner	Journal club	0	01-09-2018 09:41 AM
[NMR paper] Understanding heme proteins with hyperfine spectroscopy Understanding heme proteins with hyperfine spectroscopy Publication date: July 2017 Source:Journal of Magnetic Resonance, Volume 280</br> Author(s): Sabine Van Doorslaer</br> Heme proteins are versatile proteins that are involved in a large number of biological processes. Many spectroscopic methods are used to gain insight into the different mechanistic processes governing heme-protein functions. Since many (intermediate) states of heme proteins are paramagnetic, electron paramagnetic resonance (EPR) methods, such as hyperfine spectroscopy, offer unique tools for...	nmrlearner	Journal club	0	06-02-2017 08:33 PM
[NMR paper] One-Step Microfluidic Fabrication of Polyelectrolyte Microcapsules in Aqueous Conditions for Protein Release One-Step Microfluidic Fabrication of Polyelectrolyte Microcapsules in Aqueous Conditions for Protein Release We report a microfluidic approach for one-step fabrication of polyelectrolyte microcapsules in aqueous conditions. Using two immiscible aqueous polymer solutions, we generate transient water-in-water-in-water double emulsion droplets and use them as templates to fabricate polyelectrolyte microcapsules. The capsule shell is formed by the complexation of oppositely charged polyelectrolytes at the immiscible interface. We find that attractive electrostatic interactions can...	nmrlearner	Journal club	0	09-26-2016 04:55 PM
T2 Biosystems gets two more patents for assay - Mass High Tech http://www.bionmr.com//nt1.ggpht.com/news/tbn/Mc0Q1tEfq_lbfM/6.jpg Mass High Tech <img alt="" height="1" width="1" /> T2 Biosystems gets two more patents for assay Mass High Tech In February, the company won another patent (8,102,176) which broadly covers the use of nuclear magnetic resonance to detect analytes. The assay can detect â??anythingâ?? in biological samples, said McDonough, ranging from certain types of DNA to proteins ... and more » T2 Biosystems gets two more patents for assay - Mass High Tech	nmrlearner	Online News	0	11-14-2012 08:42 PM
[Question from NMRWiki Q&A forum] NMR integral of Hydrophobically modified polyelectrolyte NMR integral of Hydrophobically modified polyelectrolyte Hi there, I have a polyelectrolyte polyethylenimine (PEI) grafted with DSPE-PEG (lipid-polyethylene glycol). I have some problem in calculating the grafting density. I do that by the integral of the two polymers. It does not dissolve (not a clear solution) in CHCl3, CH2Cl2, MeOH, DMF. OK in water (clear after heating/sonication) and good in DMSO. But the peak of DMSO (2.5) overlap with the peak of PEI (2.4-3.3). In water, the peak of the lipid is very bad and it is not "right" (coz it is with PEG and the ratios between PEG and...	nmrlearner	News from other NMR forums	0	04-25-2012 05:25 AM
Free-Standing Mesoporous Carbon Thin Films with Highly Ordered Pore Architectures for Nanodevices Free-Standing Mesoporous Carbon Thin Films with Highly Ordered Pore Architectures for Nanodevices Dan Feng, Yingying Lv, Zhangxiong Wu, Yuqian Dou, Lu Han, Zhenkun Sun, Yongyao Xia, Gengfeng Zheng and Dongyuan Zhao http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja2056227/aop/images/medium/ja-2011-056227_0008.gif Journal of the American Chemical Society DOI: 10.1021/ja2056227 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/kH5IriZSWVA	nmrlearner	Journal club	0	09-07-2011 08:21 AM
[NMR paper] The polyelectrolyte behavior of actin filaments: a 25Mg NMR study. The polyelectrolyte behavior of actin filaments: a 25Mg NMR study. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles The polyelectrolyte behavior of actin filaments: a 25Mg NMR study. Biochemistry. 1999 Jun 1;38(22):7219-26 Authors: Xian W, Tang JX, Janmey PA, Braunlin WH Under physiological conditions, filamentous actin (F-actin) is a polyanionic protein filament. Key features of the behavior of F-actin are shared with other well-characterized polyelectrolytes, in particular, duplex DNA....	nmrlearner	Journal club	0	08-21-2010 04:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off