Two histidines in an alpha-helix: rigid Co2+-binding motif for PCS measurements by NMR spectroscopy.
Angew Chem Int Ed Engl. 2018 Apr 06;:
Authors: Bahramzadeh A, Jiang H, Huber T, Otting G
Abstract
Pseudocontact shifts (PCS) generated by paramagnetic metal ions present valuable long-range information in protein structural biology by nuclear magnetic resonance (NMR) spectroscopy. Faithful interpretation of the PCSs, however, requires complete immobilization of the metal ion relative to the protein, which is difficult to achieve by synthetic metal tags. Here we show that two histidine residues in sequential turns of an alpha-helix provide a binding site for a Co2+ ion, which positions the metal ion in a uniquely well-defined and predictable location. The exchange between bound and free cobalt is slow on the timescale defined by chemical shifts, but the NMR resonance assignments are nonetheless readily transferred from the diamagnetic to the paramagnetic NMR spectrum by an IzSz-exchange experiment. The double-histidine-Co2+ motif offers a straightforward, inexpensive, and convenient way of generating precision PCSs in proteins.
PMID: 29624837 [PubMed - as supplied by publisher]
[NMR paper] Peptide directed binding; a novel approach for the discovery of modulators of alpha-helix mediated protein-protein interactions demonstrated with apoptosis regulating Mcl-1
Peptide directed binding; a novel approach for the discovery of modulators of alpha-helix mediated protein-protein interactions demonstrated with apoptosis regulating Mcl-1
Targeting PPIs with small molecules can be challenging due to large, hydrophobic binding surfaces. Here, we describe a strategy that exploits selective alpha-helical PPIs, transferring these characteristics to small molecules. The proof-of-concept is exemplified with the apoptosis regulator Mcl-1, commonly exploited by cancers to avoid cell death. Peptide directed binding uses few synthetic transformations, requires...
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[NMR paper] Installation of a rigid EDTA-like motif into a protein ?-helix for paramagnetic NMR spectroscopy with Co(II) ions.
Installation of a rigid EDTA-like motif into a protein ?-helix for paramagnetic NMR spectroscopy with Co(II) ions.
Installation of a rigid EDTA-like motif into a protein ?-helix for paramagnetic NMR spectroscopy with Co(II) ions.
Chemistry. 2015 Dec 4;
Authors: Swarbrick J, Ung P, Dennis M, Lee M, Chhabra S, Graham B
Abstract
Coupling two copies of an iminodiacetic acid-cysteine hybrid ligand to a pair of cysteine residues positioned in an i, i + 4 arrangement within a protein ?-helix leads to generation of an EDTA-like metal...
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12-05-2015 01:26 PM
A strong 13C chemical shift signature provides the coordination mode of histidines in zinc-binding proteins
A strong 13C chemical shift signature provides the coordination mode of histidines in zinc-binding proteins
Abstract Zinc is the second most abundant metal ion incorporated in proteins, and is in many cases a crucial component of protein three-dimensional structures. Zinc ions are frequently coordinated by cysteine and histidine residues. Whereas cysteines bind to zinc via their unique Sγ atom, histidines can coordinate zinc with two different coordination modes, either Nδ1 or Nε2 is coordinating the zinc ion. The determination of this coordination mode is crucial for the accurate...
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04-23-2012 03:31 AM
Engineering of a bis-chelator motif into a protein ?-helix for rigid lanthanide binding and paramagnetic NMR spectroscopy.
Engineering of a bis-chelator motif into a protein ?-helix for rigid lanthanide binding and paramagnetic NMR spectroscopy.
Engineering of a bis-chelator motif into a protein ?-helix for rigid lanthanide binding and paramagnetic NMR spectroscopy.
Chem Commun (Camb). 2011 May 27;
Authors: Swarbrick JD, Ung P, Su XC, Maleckis A, Chhabra S, Huber T, Otting G, Graham B
Attachment of two nitrilotriacetic acid-based ligands to a protein ?-helix in an i, i + 4 configuration produces an octadentate chelating motif that is able to bind paramagnetic...
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05-28-2011 06:50 PM
[NMR paper] NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking t
NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains.
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J Mol Biol. 2001 Sep 7;312(1):167-75
Authors: Hanaoka S, Nagadoi A, Yoshimura S, Aimoto S, Li B, de Lange T, Nishimura Y
Mammalian telomeres are composed of long tandem arrays of double-stranded telomeric TTAGGG repeats associated with...
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11-19-2010 08:44 PM
[NMR paper] Pressure-dependent changes in the structure of the melittin alpha-helix determined by
Pressure-dependent changes in the structure of the melittin alpha-helix determined by NMR.
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J Biomol NMR. 2001 Feb;19(2):115-24
Authors: Iwadate M, Asakura T, Dubovskii PV, Yamada H, Akasaka K, Williamson MP
A novel method is described, which uses changes in NMR chemical shifts to characterise the structural change in a protein with pressure. Melittin in methanol is a small alpha-helical protein, and its chemical shifts change linearly...
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11-19-2010 08:32 PM
[NMR paper] The helix-hinge-helix structural motif in human apolipoprotein A-I determined by NMR
The helix-hinge-helix structural motif in human apolipoprotein A-I determined by NMR spectroscopy.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles The helix-hinge-helix structural motif in human apolipoprotein A-I determined by NMR spectroscopy.
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Authors: Wang G, Sparrow JT, Cushley RJ
The conformation of a synthetic peptide of 46 residues from apoA-I was investigated by fluorescence, CD, and 2D NMR spectroscopies in lipid-mimetic environments....
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08-22-2010 05:08 PM
[NMR paper] Probing the relationship between alpha-helix formation and calcium affinity in tropon
Probing the relationship between alpha-helix formation and calcium affinity in troponin C: 1H NMR studies of calcium binding to synthetic and variant site III helix-loop-helix peptides.
Related Articles Probing the relationship between alpha-helix formation and calcium affinity in troponin C: 1H NMR studies of calcium binding to synthetic and variant site III helix-loop-helix peptides.
Biochemistry. 1991 Aug 27;30(34):8339-47
Authors: Shaw GS, Hodges RS, Sykes BD
Three 34-residue peptides corresponding to the high-affinity calcium-binding site...