Two Classes of Cholesterol Binding Sites for the ?2AR Revealed by*Thermostability and NMR.
Biophys J. 2014 Nov 18;107(10):2305-12
Authors: Gater DL, Saurel O, Iordanov I, Liu W, Cherezov V, Milon A
Abstract
Cholesterol binding to G protein-coupled receptors (GPCRs) and modulation of their activities in membranes is a fundamental issue for understanding their function. Despite the identification of cholesterol binding sites in high-resolution x-ray structures of the ?2 adrenergic receptor (?2AR) and other GPCRs, the binding affinity of cholesterol for this receptor and exchange rates between the free and bound cholesterol remain unknown. In this study we report the existence of two classes of cholesterol binding sites in ?2AR. By analyzing the ?2AR unfolding temperature in lipidic cubic phase (LCP) as a function of cholesterol concentration we observed high-affinity cooperative binding of cholesterol with sub-nM affinity constant. In contrast, saturation transfer difference (STD) NMR experiments revealed the existence of a second class of cholesterol binding sites, in fast exchange on the STD NMR timescale. Titration of the STD signal as a function of cholesterol concentration provided a lower limit of 100*mM for their dissociation constant. However, these binding sites are specific for both cholesterol and ?2AR, as shown with control experiments using ergosterol and a control membrane protein (KpOmpA). We postulate that this specificity is mediated by the high-affinity bound cholesterol molecules and propose the formation of transient cholesterol clusters around the*high-affinity binding sites.
[NMR paper] Unique Structure and Dynamics of the EphA5 Ligand Binding Domain Mediate Its Binding Specificity as Revealed by X-ray Crystallography, NMR and MD Simulations.
Unique Structure and Dynamics of the EphA5 Ligand Binding Domain Mediate Its Binding Specificity as Revealed by X-ray Crystallography, NMR and MD Simulations.
Unique Structure and Dynamics of the EphA5 Ligand Binding Domain Mediate Its Binding Specificity as Revealed by X-ray Crystallography, NMR and MD Simulations.
PLoS One. 2013;8(9):e74040
Authors: Huan X, Shi J, Lim L, Mitra S, Zhu W, Qin H, Pasquale EB, Song J
Abstract
The 16 EphA and EphB receptors represent the largest family of receptor tyrosine kinases, and their interactions...
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[NMR paper] BcL-xL Conformational Changes upon Fragment Binding Revealed by NMR.
BcL-xL Conformational Changes upon Fragment Binding Revealed by NMR.
BcL-xL Conformational Changes upon Fragment Binding Revealed by NMR.
PLoS One. 2013;8(5):e64400
Authors: Aguirre C, Ten Brink T, Walker O, Guillière F, Davesne D, Krimm I
Abstract
Protein-protein interactions represent difficult but increasingly important targets for the design of therapeutic compounds able to interfere with biological processes. Recently, fragment-based strategies have been proposed as attractive approaches for the elaboration of protein-protein...
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05-30-2013 09:46 PM
[NMR paper] Role of entropy in protein thermostability: folding kinetics of a hyperthermophilic c
Role of entropy in protein thermostability: folding kinetics of a hyperthermophilic cold shock protein at high temperatures using 19F NMR.
Related Articles Role of entropy in protein thermostability: folding kinetics of a hyperthermophilic cold shock protein at high temperatures using 19F NMR.
Biochemistry. 2002 Oct 1;41(39):11670-80
Authors: Schuler B, Kremer W, Kalbitzer HR, Jaenicke R
We used (19)F NMR to extend the temperature range accessible to detailed kinetic and equilibrium studies of a hyperthermophilic protein. Employing an...
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[NMR paper] TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP.
TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP.
Related Articles TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP.
FEBS Lett. 2000 Feb 25;468(2-3):149-54
Authors: Bagby S, Mal TK, Liu D, Raddatz E, Nakatani Y, Ikura M
TATA box binding protein (TBP)-promoter interaction nucleates assembly of the RNA polymerase II transcription initiation complex. Transcription factor IIA (TFIIA) stabilizes the TBP-promoter complex whereas the N-terminal domain of the largest TAF(II) inhibits...
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[NMR paper] 19F NMR evidence for interactions between the c-AMP binding sites on the c-AMP recept
19F NMR evidence for interactions between the c-AMP binding sites on the c-AMP receptor protein from E. coli.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles 19F NMR evidence for interactions between the c-AMP binding sites on the c-AMP receptor protein from E. coli.
FEBS Lett. 1991 May 20;283(1):127-30
Authors: Hinds MG, King RW, Feeney J
The 19F NMR spectra of 3-fluorotyrosine containing c-AMP receptor protein (CRP) from E. coli have been recorded in the presence of...
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[NMR paper] 19F NMR study of the myosin and tropomyosin binding sites on actin.
19F NMR study of the myosin and tropomyosin binding sites on actin.
Related Articles 19F NMR study of the myosin and tropomyosin binding sites on actin.
Biochemistry. 1990 Feb 6;29(5):1348-54
Authors: Barden JA, Phillips L
Actin was labeled with pentafluorophenyl isothiocyanate at Lys-61. The label was sufficiently small not to affect the rate or extent of actin polymerization unlike the much larger fluorescein 5-isothiocyanate which completely inhibits actin polymerization . Furthermore, the label resonances in the 376.3-MHz 19F NMR spectrum...
Do the three classes of methyl S2 really exist?
The Origin of Protein Sidechain Order Parameter Distributions
Robert B. Best, Jane Clarke, and Martin Karplus
J. Am. Chem. Soc.; 2004; 126(25) pp 7734 - 7735
http://pubs.acs.org/isubscribe/journals/jacsat/126/i25/figures/ja049078wn00001.gif
Abstract:
Previous work by Wand et al. (Nature 2001, 411, 501-504) showed that the NMR order parameters characterizing the amplitude of motion of protein side chains seemed to form a multimodal distribution. At the time, no detailed explanation of this at the molecular level was offered, yet three "classes" of motion were inferred. We have...