BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 06-30-2016, 02:26 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Tolerance of a Knotted Near-Infrared Fluorescent Proteinto Random Circular Permutation

Tolerance of a Knotted Near-Infrared Fluorescent Proteinto Random Circular Permutation



Biochemistry
DOI: 10.1021/acs.biochem.6b00258



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR images] Nuclear Magnetic Resonance and Infrared Spectroscopy )
http://www.oceanmedia.in/ebooks/wp-content/uploads/2012/09/9788132306504-300x293.jpg 14/05/2014 5:15:38 PM GMT Nuclear Magnetic Resonance and Infrared Spectroscopy ) More...
nmrlearner NMR pictures 0 05-14-2014 05:14 PM
[NMR images] Nuclear Magnetic Resonance and Infrared Spectroscopy )
http://www.oceanmedia.in/ebooks/wp-content/uploads/2012/09/9788132306504.jpg 25/04/2014 10:22:28 AM GMT Nuclear Magnetic Resonance and Infrared Spectroscopy ) More...
nmrlearner NMR pictures 0 04-25-2014 10:21 AM
[NMR paper] Bioconjugation of proteins with a paramagnetic NMR and fluorescent tag.
Bioconjugation of proteins with a paramagnetic NMR and fluorescent tag. Related Articles Bioconjugation of proteins with a paramagnetic NMR and fluorescent tag. Chemistry. 2013 Dec 9;19(50):17141-9 Authors: Huang F, Pei YY, Zuo HH, Chen JL, Yang Y, Su XC Abstract Site-specific labeling of proteins with lanthanide ions offers great opportunities for investigating the structure, function, and dynamics of proteins by virtue of the unique properties of lanthanides. Lanthanide-tagged proteins can be studied by NMR, X-ray, fluorescence, and EPR...
nmrlearner Journal club 0 12-07-2013 01:00 PM
[NMR paper] Backbone NMR assignments of a topologically knotted protein in urea-denatured state.
Backbone NMR assignments of a topologically knotted protein in urea-denatured state. Related Articles Backbone NMR assignments of a topologically knotted protein in urea-denatured state. Biomol NMR Assign. 2013 Jul 14; Authors: Hsieh SJ, Mallam AL, Jackson SE, Hsu ST Abstract YibK is a tRNA methyltransferase from Haemophilus influenzae, which forms a stable homodimer in solution and contains a deep trefoil 31 knot encompassing the C-terminal helix that threads through a long loop. It has been a model system for investigating knotted...
nmrlearner Journal club 0 07-16-2013 09:04 PM
[NMR paper] NMR assignments of a hypothetical pseudo-knotted protein HP0242 from Helicobacter pylori.
NMR assignments of a hypothetical pseudo-knotted protein HP0242 from Helicobacter pylori. Related Articles NMR assignments of a hypothetical pseudo-knotted protein HP0242 from Helicobacter pylori. Biomol NMR Assign. 2013 Jul 4; Authors: Chien CT, Wang LW, Liu YN, Hsu BD, Lyu PC, Hsu ST Abstract Many knotted proteins have been discovered recently, but the folding process of which remains elusive. HP0242 is a hypothetical protein from Helicobacter pylori, which is a model system for studying the folding pathway of a knotted protein. In...
nmrlearner Journal club 0 07-05-2013 09:52 PM
[NMR paper] Backbone NMR assignments of a topologically knotted protein in urea-denatured state.
Backbone NMR assignments of a topologically knotted protein in urea-denatured state. Related Articles Backbone NMR assignments of a topologically knotted protein in urea-denatured state. Biomol NMR Assign. 2013 Jul 3; Authors: Hsieh SJ, Mallam AL, Jackson SE, Hsu ST Abstract YbeA is a 3-methylpseudoridine methyltransferase from Escherichia coli that forms a stable homodimer in solution. It is one of the deeply trefoil 31 knotted proteins, of which the knot encompasses the C-terminal helix that threads through a long loop. Recent...
nmrlearner Journal club 0 07-05-2013 08:03 AM
Molecular basis of photochromism of a fluorescent protein revealed by direct 13C dete
Molecular basis of photochromism of a fluorescent protein revealed by direct 13C detection under laser illumination Abstract Dronpa is a green fluorescent protein homologue with a photochromic property. A green laser illumination reversibly converts Dronpa from a green-emissive bright state to a non-emissive dark state, and ultraviolet illumination converts it to the bright state. We have employed solution NMR to understand the underlying molecular mechanism of the photochromism. The detail characterization of Dronpa is hindered as it is metastable in the dark state and spontaneously...
nmrlearner Journal club 0 11-07-2010 02:47 PM
Effect of chemical shift tolerance on ARIA results
Influence of chemical shift tolerances on NMR structure calculations using ARIA protocols for assigning NOE data. Fossi M, Linge J, Labudde D, Leitner D, Nilges M, Oschkinat H. Forschungsinstitut fur Molekulare Pharmakologie, Robert-Rossle-Str. 10, 13125, Berlin, Germany, oschkinat@fmp-berlin.de. J Biomol NMR. 2005 Jan;31(1):21-34. Large-scale protein structure determination by NMR via automatic assignment of NOESY spectra requires the adjustment of several parameters for optimal performance. Among those are the chemical shift tolerance windows (Delta), which allow for the...
nmrlearner Journal club 0 03-08-2005 09:39 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 08:25 AM.


Map