NMR paper Time-Resolved and Comprehensive Analysis of Surface Glycoproteins Reveals Distinct Responses of Monocytes and Macrophages to Bacterial Infection

		BioNMR > Educational resources > Journal club
[NMR paper] Time-Resolved and Comprehensive Analysis of Surface Glycoproteins Reveals Distinct Responses of Monocytes and Macrophages to Bacterial Infection

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-09-2021, 02:17 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Time-Resolved and Comprehensive Analysis of Surface Glycoproteins Reveals Distinct Responses of Monocytes and Macrophages to Bacterial Infection

Time-Resolved and Comprehensive Analysis of Surface Glycoproteins Reveals Distinct Responses of Monocytes and Macrophages to Bacterial Infection

Angewandte Chemie International Edition, Accepted Article.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[ASAP] Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase Jaekyun Jeon, Wai-Ming Yau, and Robert Tycko https://pubs.acs.org/na101/home/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.0c11156/20201207/images/medium/ja0c11156_0007.gif Journal of the American Chemical Society DOI: 10.1021/jacs.0c11156 http://feeds.feedburner.com/~r/acs/jacsat/~4/pGPDzdJltQs	nmrlearner	Journal club	0	12-08-2020 01:36 PM
[NMR paper] Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase. Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase. Related Articles Millisecond Time-Resolved Solid-State NMR Reveals a Two-Stage Molecular Mechanism for Formation of Complexes between Calmodulin and a Target Peptide from Myosin Light Chain Kinase. J Am Chem Soc. 2020 Dec 07;: Authors: Jeon J, Yau WM, Tycko R Abstract Calmodulin (CaM) mediates a wide range of biological responses to changes in...	nmrlearner	Journal club	0	12-08-2020 01:36 PM
[NMR paper] Millisecond Time Resolved Photo-CIDNP NMR Reveals a Non-Native Folding Intermediate on the Ion-Induced Refolding Pathway of Bovine ?-Lactalbumin. Millisecond Time Resolved Photo-CIDNP NMR Reveals a Non-Native Folding Intermediate on the Ion-Induced Refolding Pathway of Bovine ?-Lactalbumin. Related Articles Millisecond Time Resolved Photo-CIDNP NMR Reveals a Non-Native Folding Intermediate on the Ion-Induced Refolding Pathway of Bovine ?-Lactalbumin. Angew Chem Int Ed Engl. 2001 Nov 19;40(22):4248-4251 Authors: Wirmer J, Kühn T, Schwalbe H Abstract Aspects of the structure of the intermediate populated after 200 ms in the Ca2+ -induced refolding of ?-lactalbumin have been...	nmrlearner	Journal club	0	05-03-2018 06:46 PM
Tackling Infectious Disease, One Protein at a Time - Infection Control Today Tackling Infectious Disease, One Protein at a Time - Infection Control Today http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcSxQAQXF8Owx8hxW3zy9QmIb0u7KjyXApANQ9a5LTmgklzhuP7WY99jrVNsDJgqH2MswkZqNTUL Infection Control Today <img alt="" height="1" width="1"> Tackling Infectious Disease, One Protein at a Time Infection Control Today A protein in the micro-organism that causes giardiasis, which translates to nausea, abdominal pain, fatigue and other symptoms in hundreds of millions of ... and more »	nmrlearner	Online News	0	06-09-2017 09:13 AM
[NMR paper] Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination. Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.plosone.org-images-pone_120x30.png http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.ncbi.nlm.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination. PLoS One. 2015;10(4):e0124142 Authors: Kamba K, Nagata T,...	nmrlearner	Journal club	0	04-27-2016 01:51 PM
Researcher Studies Regulation of Transporters That are Key to Bacterial ... - Infection Control Today <img alt="" height="1" width="1"> Researcher Studies Regulation of Transporters That are Key to Bacterial ... Infection Control Today His laboratory utilizes X-ray crystallography, high-resolution protein nuclear magnetic resonance spectroscopy and small-angle X-ray scattering to determine the atomic resolution structures of proteins, in addition to biophysical and biochemical ... and more » Researcher Studies Regulation of Transporters That are Key to Bacterial ... - Infection Control Today More...	nmrlearner	Online News	0	07-20-2015 09:54 PM
NMR detection and characterization of sialylated glycoproteins and cell surface polysaccharides NMR detection and characterization of sialylated glycoproteins and cell surface polysaccharides Abstract Few solution NMR pulse sequences exist that are explicitly designed to characterize carbohydrates (glycans). This is despite the essential role carbohydrate motifs play in cellâ??cell communication, microbial pathogenesis, autoimmune disease progression and cancer metastasis, and despite that fact that glycans, often shed to extra-cellular fluids, can be diagnostic of disease. Here we present a suite of two dimensional coherence experiments to measure three different correlations...	nmrlearner	Journal club	0	09-30-2011 08:01 PM
Comprehensive determination of 3JHNHÎ± for unfolded proteins using 13Câ?²-resolved spin-echo difference spectroscopy Comprehensive determination of 3JHNHÎ± for unfolded proteins using 13Câ?²-resolved spin-echo difference spectroscopy Abstract An experiment is presented to determine 3JHNHÎ± coupling constants, with significant advantages for applications to unfolded proteins. The determination of coupling constants for the peptide chain using 1D 1H, or 2D and 3D 1H-15N correlation spectroscopy is often hampered by extensive resonance overlap when dealing with flexible, disordered proteins. In the experiment detailed here, the overlap problem is largely circumvented by recording 1H-13Câ?² correlation...	nmrlearner	Journal club	0	01-09-2011 12:46 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off