[NMR paper] Targeting the Lowest Concentration of a Toxin that Induces a Detectable Metabolic Response in living Organisms: Time Resolved In vivo 2D NMR During a Concentration Ramp.
Targeting the Lowest Concentration of a Toxin that Induces a Detectable Metabolic Response in living Organisms: Time Resolved In vivo 2D NMR During a Concentration Ramp.
Related ArticlesTargeting the Lowest Concentration of a Toxin that Induces a Detectable Metabolic Response in living Organisms: Time Resolved In vivo 2D NMR During a Concentration Ramp.
Anal Chem. 2020 Jun 18;:
Authors: Lane D, Bermel W, Ning P, Jeong TY, Martin R, Soong R, Wu B, Tabatabaei-Anaraki M, Heumann H, Gundy M, Boenisch H, Adamo A, Arhonditsis GB, Simpson AJ
Abstract
In vivo Nuclear Magnetic Resonance (NMR) is a powerful analytical tool for probing complex biological processes inside living organisms. However, due to magnetic susceptibility broadening, which produces broad lines in 1D NMR, 1H-13C 2D NMR is required for metabolite monitoring in vivo. As each 2D experiment is time consuming, often hours, this limits the temporal resolution over which in vivo processes can be monitored. Furthermore, to understand concentration dependent responses, studies are traditionally repeated using different contaminant/toxin concentrations, which can make studies prohibitively long (potentially months). In the present study, time resolved non-uniform sampling NMR is performed in the presence of a contaminant concentration sweep. The result is that the lowest concentration that elicits a metabolic response can be rapidly detected, while the metabolic pathways impacted provide information as to the toxic mode-of-action of the toxin. The lowest concentration of bisphenol A (BPA) that induces a response was ~ 0.1mg/L (detected in just 16 mins) while changes in different metabolites suggest a complex multi pathway response that leads to protein degradation at higher BPA concentrations. This proof of concept shows it is possible, based on "real-time" organism responses, to identify the sub-lethal concentration at which a toxin impacts an organism, and thus represents an essential analytical tool for the next generation of toxicity-based research and monitoring.
PMID: 32551506 [PubMed - as supplied by publisher]
Time-resolved protein activation by proximal decaging in living systems - Nature.com
Time-resolved protein activation by proximal decaging in living systems - Nature.com
Time-resolved protein activation by proximal decaging in living systems Nature.comA universal gain-of-function approach for selective and temporal control of protein activity in living systems is crucial to understanding dynamic cellular ...
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nmrlearner
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05-09-2019 05:55 AM
Assessing the potential of quantitative 2D HSQC NMR in 13 C enriched living organisms
Assessing the potential of quantitative 2D HSQC NMR in 13 C enriched living organisms
Abstract
In vivo Nuclear Magnetic Resonance (NMR) spectroscopy has great potential to interpret the biochemical response of organisms to their environment, thus making it an essential tool in understanding toxic mechanisms. However, magnetic susceptibility distortions lead to 1D NMR spectra of living organisms with lines that are too broad to identify and quantify metabolites, necessitating the use of 2D 1Hâ??13C Heteronuclear Single Quantum Coherence (HSQC) as a...
nmrlearner
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01-07-2019 05:49 AM
[Question from NMRWiki Q&A forum] Predicting aquisition time needed depending on sample concentration
Predicting aquisition time needed depending on sample concentration
Hi ,
is there a way of predicting aquisition time needed depending on sample concentration in order to get a decent spectrum for a 2D experiment for example?
Check if somebody has answered this question on NMRWiki QA forum
nmrlearner
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12-18-2014 11:22 PM
Effect of DPC concentration on IDP NMR
I am working on a protein which has an important function in regulation of Lipid metabolisism, which is found to be functioning in multiple other ways and is beleieved to be an IDP. We are trying to find the structure of this molecule in the presence of DPC micelles. Recently we have got some curious results 1. DPC concentration (actually the molar ratio with the protein) has a huge impact on what you see in the spectra 2. whether you use protonated or deuterated DPC it does not matter so much. Any insights on this?
krishna MP Das
NMR Questions and Answers
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11-21-2014 09:30 AM
Hyperpolarization without persistent radicals for in vivo real-time metabolic imaging
From The DNP-NMR Blog:
Hyperpolarization without persistent radicals for in vivo real-time metabolic imaging
Eichhorn, T.R., et al., Hyperpolarization without persistent radicals for in vivo real-time metabolic imaging. Proc. Nat. Aca. Sci. USA, 2013. 110(45): p. 18064-18069.
http://www.pnas.org/content/110/45/18064.abstract
nmrlearner
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07-28-2014 08:52 PM
Metabolic response of glioma to dichloroacetate measured in vivo by hyperpolarized 13C magnetic resonance spectroscopic imaging
From the The DNP-NMR Blog:
Metabolic response of glioma to dichloroacetate measured in vivo by hyperpolarized 13C magnetic resonance spectroscopic imaging
Park, J.M., et al., Metabolic response of glioma to dichloroacetate measured in vivo by hyperpolarized 13C magnetic resonance spectroscopic imaging. Neuro-Oncology, 2013. 15(4): p. 433-41.
http://neuro-oncology.oxfordjournals.org/content/early/2013/01/16/neuonc.nos319.abstract
nmrlearner
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04-15-2013 08:52 AM
Online help for measurement concentration by NMR
Below are links to online resources that can help students to understand how to measure concentration of substances with NMR. If you know websites that discuss this issue, please post links to them in this thread. Quantitative Nuclear Magnetic Resonance, Chemistry 3113, University of North Carolina Charlotte
Chem152, Rice University
Relevant softwareACD/Combi NMR