The Surface of Protein ?6–85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

		BioNMR > Educational resources > Journal club
The Surface of Protein ?6–85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

10-07-2017, 11:01 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

The Surface of Protein ?6–85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

The Surface of Protein ?6–85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

Biochemistry
DOI: 10.1021/acs.biochem.7b00215

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] NMR Study Reveals the Receiver Domain of Arabidopsis ETHYLENE RESPONSE1 Ethylene Receptor as an Atypical Type Response Regulator. NMR Study Reveals the Receiver Domain of Arabidopsis ETHYLENE RESPONSE1 Ethylene Receptor as an Atypical Type Response Regulator. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--journals.plos.org-plosone-resource-img-external-pone_120x30.png http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/https:--www.ncbi.nlm.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles NMR Study Reveals the Receiver Domain of Arabidopsis ETHYLENE RESPONSE1 Ethylene Receptor as an Atypical Type Response Regulator. PLoS One....	nmrlearner	Journal club	0	08-03-2017 11:48 AM
[NMR paper] Structural and Biochemical Analysis of Protein–Protein Interactions Between the Acyl-Carrier Protein and Product Template Domain Structural and Biochemical Analysis of Protein–Protein Interactions Between the Acyl-Carrier Protein and Product Template Domain In fungal non-reducing polyketide synthases (NR-PKS) the acyl-carrier protein (ACP) carries the growing polyketide intermediate through iterative rounds of elongation, cyclization and product release. This process occurs through a controlled, yet enigmatic coordination of the ACP with its partner enzymes. The transient nature of ACP interactions with these catalytic domains imposes a major obstacle for investigation of the influence of protein–protein...	nmrlearner	Journal club	0	09-22-2016 10:41 PM
Monitoring Protein Structure on the Surface of Gold Nanoparticles using NMR Spectroscopy Monitoring Protein Structure on the Surface of Gold Nanoparticles using NMR Spectroscopy Publication date: 27 January 2015 Source:Biophysical Journal, Volume 108, Issue 2, Supplement 1</br> Author(s): Ailin Wang , Karen Woods , Tam Vo , Alex Coats , Nicholas C. Fitzkee</br> </br></br> </br></br> More...	nmrlearner	Journal club	0	01-28-2015 05:28 PM
?-NMRMeasurements of Lithium Ion Transportin Thin Films of Pure and Lithium-Salt-Doped Poly(ethylene oxide) ?-NMRMeasurements of Lithium Ion Transportin Thin Films of Pure and Lithium-Salt-Doped Poly(ethylene oxide) Iain McKenzie, Masashi Harada, Robert F. Kiefl, C. D. Philip Levy, W. Andrew MacFarlane, Gerald D. Morris, Shin-Ichi Ogata, Matthew R. Pearson and Jun Sugiyama http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja503066a/aop/images/medium/ja-2014-03066a_0004.gif Journal of the American Chemical Society DOI: 10.1021/ja503066a http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA...	nmrlearner	Journal club	0	05-25-2014 06:31 PM
Estimation of protein function using template-based alignment of enzyme active ... - 7thSpace Interactive (press release) Estimation of protein function using template-based alignment of enzyme active ... - 7thSpace Interactive (press release) <img alt="" height="1" width="1" /> Estimation of protein function using template-based alignment of enzyme active ... 7thSpace Interactive (press release) 261 additional motifs automatically translated from Jonathan Barker's JESS motif set and a set of NMR motifs is under development. Alignments are evaluated by visual superposition, Levenshtein distance and ... Read here	nmrlearner	Online News	0	03-27-2014 03:46 AM
Molecular-level characterization of the structure and the surface chemistry of periodic mesoporous organosilicates using DNP-surface enhanced NMR spectroscopy From The DNP-NMR Blog: Molecular-level characterization of the structure and the surface chemistry of periodic mesoporous organosilicates using DNP-surface enhanced NMR spectroscopy Gruning, W.R., et al., Molecular-level characterization of the structure and the surface chemistry of periodic mesoporous organosilicates using DNP-surface enhanced NMR spectroscopy. Phys Chem Chem Phys, 2013. 15(32): p. 13270-4. http://www.ncbi.nlm.nih.gov/pubmed/23440402	nmrlearner	News from NMR blogs	0	07-29-2013 08:22 PM
GeNMR - template-based structure generation from NMR data GeNMR website GeNMR (GEnerate NMR structures) is a web server for template-based or ab initio generation of 3D protein structures using NOE-derived distance restraints and NMR chemical shifts. The web server produces an ensemble of PDB coordinates within a period ranging from 20 minutes to 4 hours, depending on protein size, server load, quality and type of experimental information, and selected protocol options. References: 1. Berjanskii M, Tang P, Liang J, Cruz JA, Zhou J, Zhou Y, Bassett E, MacDonell C, Lu P, Lin G, Wishart DS. (2009)GeNMR: a web server for rapid NMR-based...	markber	NMR software	0	02-23-2012 10:21 PM
[NMR paper] Thermal stability studies of a globular protein in aqueous poly(ethylene glycol) by ( Thermal stability studies of a globular protein in aqueous poly(ethylene glycol) by (1)H NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_120x27.gif Related Articles Thermal stability studies of a globular protein in aqueous poly(ethylene glycol) by (1)H NMR. Biotechnol Bioeng. 1996 Aug 20;51(4):410-21 Authors: Hancock TJ, Hsu JT The reversible folding destabilization of hen lysozyme has been confirmed by a melting temperature (T(m)) decrease in aqueous...	nmrlearner	Journal club	0	08-22-2010 02:20 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off