Related ArticlesStudy of ion translocation by respiratory complex I. A new insight using (23)Na NMR spectroscopy.
Biochim Biophys Acta. 2012 Oct;1817(10):1810-6
Authors: Batista AP, Marreiros BC, Louro RO, Pereira MM
Abstract
The research on complex I has gained recently a new enthusiasm, especially after the resolution of the crystallographic structures of bacterial and mitochondrial complexes. Most attention is now dedicated to the investigation of the energy coupling mechanism(s). The proton has been identified as the coupling ion, although in the case of some bacterial complexes I Na(+) has been proposed to have that role. We have addressed the relation of some complexes I with Na(+) and developed an innovative methodology using (23)Na NMR spectroscopy. This allowed the investigation of Na(+) transport taking the advantage of directly monitoring changes in Na(+) concentration. Methodological aspects concerning the use of (23)Na NMR spectroscopy to measure accurately sodium transport in bacterial membrane vesicles are discussed here. External-vesicle Na(+) concentrations were determined by two different methods: 1) by integration of the resonance frequency peak and 2) using calibration curves of resonance frequency shift dependence on Na(+) concentration. Although the calibration curves are a suitable way to determine Na(+) concentration changes under conditions of fast exchange, it was shown not to be applicable to the bacterial membrane vesicle systems. In this case, the integration of the resonance frequency peak is the most appropriate analysis for the quantification of external-vesicle Na(+) concentration. This article is part of a Special Issue entitled: 17th European Bioenergetics Conference (EBEC 2012).
[NMR paper] Role of hydrophobic interactions in the encounter complex formation of plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.
Role of hydrophobic interactions in the encounter complex formation of plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.
Role of hydrophobic interactions in the encounter complex formation of plastocyanin and cytochrome f complex revealed by paramagnetic NMR spectroscopy.
J Am Chem Soc. 2013 Apr 29;
Authors: Scanu S, Förster J, Ullmann GM, Ubbink M
Abstract
Protein complex formation is thought to be at least a two-step process, in which the active complex is preceded by the formation of an encounter complex....
Exploring translocation of proteins on DNA by NMR.
Exploring translocation of proteins on DNA by NMR.
Exploring translocation of proteins on DNA by NMR.
J Biomol NMR. 2011 Aug 17;
Authors: Marius Clore G
Abstract
While an extensive body of knowledge has accumulated on the structures of transcription factors, DNA and their complexes from both NMR and crystallography, much less is known at a molecular level regarding the mechanisms whereby transcription factors locate their specific DNA target site within an overwhelming sea of non-specific DNA sites. Indirect kinetic data suggested that...
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08-19-2011 02:56 PM
The calponin regulatory region is intrinsically unstructured: novel insight into actin-calponin and calmodulin-calponin interfaces using NMR spectroscopy.
The calponin regulatory region is intrinsically unstructured: novel insight into actin-calponin and calmodulin-calponin interfaces using NMR spectroscopy.
The calponin regulatory region is intrinsically unstructured: novel insight into actin-calponin and calmodulin-calponin interfaces using NMR spectroscopy.
Biophys J. 2011 Apr 6;100(7):1718-28
Authors: Pfuhl M, Al-Sarayreh S, El-Mezgueldi M
Calponin is an actin- and calmodulin-binding protein believed to regulate the function of actin. Low-resolution studies based on proteolysis established that...
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04-06-2011 10:54 AM
[NMR paper] Paramagnetic NMR study of Cu(2+)-IDA complex localization on a protein surface and it
Paramagnetic NMR study of Cu(2+)-IDA complex localization on a protein surface and its application to elucidate long distance information.
Related Articles Paramagnetic NMR study of Cu(2+)-IDA complex localization on a protein surface and its application to elucidate long distance information.
FEBS Lett. 2004 May 21;566(1-3):157-61
Authors: Nomura M, Kobayashi T, Kohno T, Fujiwara K, Tenno T, Shirakawa M, Ishizaki I, Yamamoto K, Matsuyama T, Mishima M, Kojima C
The paramagnetic metal chelate complex Cu(2+)-iminodiacetic acid (Cu(2+)-IDA) was...
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11-24-2010 09:51 PM
[NMR paper] Rapid corepressor exchange from the trp-repressor/operator complex: an NMR study of [
Rapid corepressor exchange from the trp-repressor/operator complex: an NMR study of -L-tryptophan.
Related Articles Rapid corepressor exchange from the trp-repressor/operator complex: an NMR study of -L-tryptophan.
J Biomol NMR. 1995 Jun;5(4):367-75
Authors: Lee W, Revington M, Farrow NA, Nakamura A, Utsunomiya-Tate N, Miyake Y, Kainosho M, Arrowsmith CH
-L-tryptophan was prepared biosynthetically and its dynamic properties and intermolecular interaction with a complex of Escherichia coli trp-repressor and a 20 base-pair operator DNA were...
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08-22-2010 03:41 AM
[NMR paper] Proton NMR study of the heme complex of hemopexin.
Proton NMR study of the heme complex of hemopexin.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Proton NMR study of the heme complex of hemopexin.
Biochim Biophys Acta. 1994 Jul 6;1200(2):161-6
Authors: Deeb RS, Muller-Eberhard U, Peyton DH
Proton nuclear magnetic resonance spectroscopy of the complex of heme with hemopexin, a plasma protein with an exceptionally high affinity for heme, is reported. Characteristic spectra are shown for heme.hemopexin of cow, human,...
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08-22-2010 03:29 AM
[NMR paper] Two-dimensional NMR study of a protein-DNA complex. lac repressor headpiece-operator
Two-dimensional NMR study of a protein-DNA complex. lac repressor headpiece-operator interaction.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Two-dimensional NMR study of a protein-DNA complex. lac repressor headpiece-operator interaction.
Biochem Pharmacol. 1990 Jul 1;40(1):89-96
Authors: Kaptein R, Lamerichs RM, Boelens R, Rullmann JA
The interaction of the N-terminal DNA-binding domain (56 amino acid residues) of the lac repressor with lac operator DNA was...