BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-22-2010, 03:33 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Study of the interaction between salivary proline-rich proteins and a polyphenol by 1

Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy.

Related Articles Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy.

Eur J Biochem. 1994 Feb 1;219(3):923-35

Authors: Murray NJ, Williamson MP, Lilley TH, Haslam E

The interaction between salivary proline-rich proteins and plant polyphenols (tannins) in the oral cavity and their subsequent precipitation influences the taste, texture and nutritional value of food; it is thought to be responsible for the astringency of many foods and beverages. To investigate the interaction, two-dimensional 1H-NMR studies have been carried out on the binding of a representative polyphenol, pentagalloyl glucose, to two synthetic peptides (19 and 22 residues in length) that are typical of the repeat sequence of mouse salivary proline-rich protein MP5. Intermolecular nuclear Overhauser effects and chemical shift changes show that the main binding sites on the peptides are proline residues together with the preceding amide bond and amino acid. The interaction is principally a hydrophobic association between a galloyl ring and the pyrrolidine ring face containing the C alpha proton, but secondary hydrogen-bonding effects help to stabilise the complex. Very similar interactions are seen for both peptides. The conformation of the peptides remains extended on binding. The chemical shift changes seen for many of the peptide protons can be fitted to a simple binding curve with dissociation constant of around 40 mM, but some protons show evidence of cooperative binding involving several galloyl groups. Higher concentrations of pentagalloyl glucose lead to a reduced off-rate from the complex and eventual precipitation which implies that precipitation is caused by a kinetic competition between aggregation and dissociation of the complex.

PMID: 8112344 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
(13)C/(15)N-(19)F Intermolecular REDOR NMR Study of the Interaction of TAR RNA with T
(13)C/(15)N-(19)F Intermolecular REDOR NMR Study of the Interaction of TAR RNA with Tat Peptides. (13)C/(15)N-(19)F Intermolecular REDOR NMR Study of the Interaction of TAR RNA with Tat Peptides. J Am Chem Soc. 2010 Nov 24; Authors: Huang W, Varani G, Drobny GP The complex of the HIV TAR RNA with the viral regulatory protein Tat is of considerable interest, but the plasticity of this interaction has made it impossible so far to establish the structure of that complex. In order to explore a new approach to obtain structural information on...
nmrlearner Journal club 0 11-26-2010 05:32 PM
13C/15N-19F Intermolecular REDOR NMR Study of the Interaction of TAR RNA with Tat Pep
13C/15N-19F Intermolecular REDOR NMR Study of the Interaction of TAR RNA with Tat Peptides Wei Huang, Gabriele Varani and Gary P. Drobny http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja1051439/aop/images/medium/ja-2010-051439_0005.gif Journal of the American Chemical Society DOI: 10.1021/ja1051439 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/bKQhcXWaqW0
nmrlearner Journal club 0 11-25-2010 07:22 AM
[NMR paper] Delineation of conformational preferences in human salivary statherin by 1H, 31P NMR
Delineation of conformational preferences in human salivary statherin by 1H, 31P NMR and CD studies: sequential assignment and structure-function correlations. Related Articles Delineation of conformational preferences in human salivary statherin by 1H, 31P NMR and CD studies: sequential assignment and structure-function correlations. J Biomol Struct Dyn. 1998 Aug;16(1):91-107 Authors: Naganagowda GA, Gururaja TL, Levine MJ Membrane-induced solution structure of human salivary statherin, a 43 amino acid residue acidic phosphoprotein, has been...
nmrlearner Journal club 0 11-17-2010 11:15 PM
[NMR paper] Birch pollen profilin: structural organization and interaction with poly-(L-proline)
Birch pollen profilin: structural organization and interaction with poly-(L-proline) peptides as revealed by NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Birch pollen profilin: structural organization and interaction with poly-(L-proline) peptides as revealed by NMR. FEBS Lett. 1997 Jul 14;411(2-3):291-5 Authors: Domke T, Federau T, Schlüter K, Giehl K, Valenta R, Schomburg D, Jockusch BM The secondary structure of birch pollen profilin, a potent human...
nmrlearner Journal club 0 08-22-2010 05:08 PM
[NMR paper] Multiple cis-trans conformers of the prolactin receptor proline-rich motif (PRM) pept
Multiple cis-trans conformers of the prolactin receptor proline-rich motif (PRM) peptide detected by reverse-phase HPLC, CD and NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.biochemj.org-images-bj_pubmed.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Multiple cis-trans conformers of the prolactin receptor proline-rich motif (PRM) peptide detected by reverse-phase HPLC, CD and NMR spectroscopy. Biochem J. 1996 May 1;315 ( Pt 3):833-44 ...
nmrlearner Journal club 0 08-22-2010 02:27 PM
[NMR paper] Proline pipe helix: structure of the tus proline repeat determined by 1H NMR.
Proline pipe helix: structure of the tus proline repeat determined by 1H NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles Proline pipe helix: structure of the tus proline repeat determined by 1H NMR. Biochemistry. 1996 Jan 23;35(3):698-703 Authors: Butcher DJ, Nedved ML, Neiss TG, Moe GR The structure of a 22 amino acid peptide, TPPI , that is similar to the proline repeat segment of the replication arrest protein, Tus, has been determined by 1H NMR in 50% trifluroethanol. The...
nmrlearner Journal club 0 08-22-2010 02:27 PM
[NMR paper] Solution conformations of proline rings in proteins studied by NMR spectroscopy.
Solution conformations of proline rings in proteins studied by NMR spectroscopy. Related Articles Solution conformations of proline rings in proteins studied by NMR spectroscopy. J Biomol NMR. 1995 Sep;6(2):123-8 Authors: Cai M, Huang Y, Liu J, Krishnamoorthi R Three different conformations of proline rings in a protein in solution, Up, Down and Twist, have been distinguished, and stereospecific assignments of the pyrrolidine beta-, gamma- and delta-hydrogens have been made on the basis of 1H-1H vicinal coupling constant patterns and...
nmrlearner Journal club 0 08-22-2010 03:50 AM
[NMR paper] Study of the interaction between salivary proline-rich proteins and a polyphenol by 1
Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles Study of the interaction between salivary proline-rich proteins and a polyphenol by 1H-NMR spectroscopy. Eur J Biochem. 1994 Feb 1;219(3):923-35 Authors: Murray NJ, Williamson MP, Lilley TH, Haslam E The interaction between salivary proline-rich proteins and plant polyphenols...
nmrlearner Journal club 0 08-22-2010 03:33 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 05:45 PM.


Map