Related ArticlesStudy of the behaviour of amino acids in aqueous solution by time-domain NMR and high-resolution NMR.
Magn Reson Chem. 2005 Apr;43(4):309-15
Authors: Khallouk M, Rutledge DN, Silva AM, Delgadillo I
The study of protein hydration by time-domain NMR is complicated by the great number of interactions involved, resulting from the presence of several amino acids and the possible modifications produced by the various structures. Moreover, a good comprehension of the molecular interactions of the simple amino acids in solution is essential to elucidate the mechanism of the biological functions of proteins. Measurements of transverse relaxation rates of the protons of water (R(2) = 1/T(2)) in aqueous solutions of amino acids such as L-glycine, L-asparagine, L-arginine and L-tryptophan were carried out in order to study the effects of chemical exchange and molecular diffusion on the amplitude of R(2). The values of R(2) measured by the Carr-Purcell-Meiboom-Gill (CPMG) sequence were studied while varying the solution pH and the parameters of the CPMG sequence. The dependence of R(2) on pH and tau (inter-pulse delay between the first and the second pulses of the CPMG sequence) is interpreted in terms of chemical exchange between the protons of water and those of the labile amino acid groups. This interpretation was confirmed by the analysis of the proton spectra acquired using a 300 MHz NMR spectrometer.
[Question from NMRWiki Q&A forum] 13C cuaternary centers in amino acids
13C cuaternary centers in amino acids
I've got a sample of about 5mg of an amino acid that is the final product of a a synthesis. Due to the long relaxation time that the carboxilic and the alpha C we only got a 200 varian Mercury instrument and we're unable to obtain those signals. I was wondering if an APT is better than DEPT, because we're only interested in this signals and i've heart the overall pulse sequence is shorter than the DEPT, increasing the number of scans in the same period of time
Check if somebody has answered this question on NMRWiki QA forum
nmrlearner
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08-31-2011 07:12 PM
NMR study of the structure and self-association of Core peptide in aqueous solution and DPC micelles.
NMR study of the structure and self-association of Core peptide in aqueous solution and DPC micelles.
NMR study of the structure and self-association of Core peptide in aqueous solution and DPC micelles.
Biopolymers. 2011;96(2):177-80
Authors: Zheng G, Torres AM, Ali M, Manolios N, Price WS
Core peptide is a hydrophobic peptide derived from the T-cell antigen receptor-alpha chain (TCR-alpha) transmembrane region with therapeutic potential. The mechanism by which the peptide inserts into the membrane, including any requirements to change...
nmrlearner
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07-20-2011 10:00 AM
[KPWU blog] Names of Atoms of Amino acids
Names of Atoms of Amino acids
I really hate the inconsistent nomenclature of atoms of amino acids between different programs/database. I finished all NOESY assignment on Sparky using PDB nomenclature and the Sparky XPLOR constraint plugin (shortcut xf) doesn’t take care of the differences between XPLOR and PDB. Thus I have to find a table showing me the differences of names http://stats.wordpress.com/b.gif?host=kpwu.wordpress.com&blog=76132&post=262&subd=kpwu&ref=&feed=1
Go to KPWU blog to read complete post.
nmrlearner
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01-28-2011 04:52 AM
[NMR paper] NMR study of a membrane protein in detergent-free aqueous solution.
NMR study of a membrane protein in detergent-free aqueous solution.
Related Articles NMR study of a membrane protein in detergent-free aqueous solution.
Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):8893-8
Authors: Zoonens M, Catoire LJ, Giusti F, Popot JL
One of the major obstacles to membrane protein (MP) structural studies is the destabilizing effect of detergents. Amphipols (APols) are short amphipathic polymers that can substitute for detergents to keep MPs water-soluble under mild conditions. In the present work, we have explored the...
nmrlearner
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11-25-2010 08:21 PM
[NMR paper] 14N NMR relaxation times of several protein amino acids in aqueous solution--comparis
14N NMR relaxation times of several protein amino acids in aqueous solution--comparison with 17O NMR data and estimation of the relative hydration numbers in the cationic and zwitterionic forms.
Related Articles 14N NMR relaxation times of several protein amino acids in aqueous solution--comparison with 17O NMR data and estimation of the relative hydration numbers in the cationic and zwitterionic forms.
J Magn Reson. 2003 Oct;164(2):294-303
Authors: Troganis AN, Tsanaktsidis C, Gerothanassis IP
The 14N nuclear magnetic resonance (NMR)...
nmrlearner
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11-24-2010 09:16 PM
[NMR paper] The solution conformations of amino acids from molecular dynamics simulations of Gly-
The solution conformations of amino acids from molecular dynamics simulations of Gly-X-Gly peptides: comparison with NMR parameters.
Related Articles The solution conformations of amino acids from molecular dynamics simulations of Gly-X-Gly peptides: comparison with NMR parameters.
Biochem Cell Biol. 1998;76(2-3):164-70
Authors: van der Spoel D
The conformations that amino acids can adopt in the random coil state are of fundamental interest in the context of protein folding research and studies of protein-peptide interactions. To date, no...
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11-17-2010 11:06 PM
[NMR paper] NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing co
NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.
Biochemistry. 1997 Apr 1;36(13):3959-70
Authors: Zhang O, Forman-Kay JD
The isolated N-terminal SH3 domain of the Drosophila adapter protein drk (drkN SH3 domain) exists in a dynamic equilibrium between a folded (F(exch)) and an unfolded (U(exch)) state...
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08-22-2010 03:31 PM
[NMR paper] NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing co
NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles NMR studies of unfolded states of an SH3 domain in aqueous solution and denaturing conditions.
Biochemistry. 1997 Apr 1;36(13):3959-70
Authors: Zhang O, Forman-Kay JD
The isolated N-terminal SH3 domain of the Drosophila adapter protein drk (drkN SH3 domain) exists in a dynamic equilibrium between a folded (F(exch)) and an unfolded (U(exch)) state...