Related ArticlesSPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra.
J Biomol NMR. 2002 Oct;24(2):113-21
Authors: Baran MC, Moseley HN, Sahota G, Montelione GT
Modern protein NMR spectroscopy laboratories have a rapidly growing need for an easily queried local archival system of raw experimental NMR datasets. SPINS (Standardized ProteIn Nmr Storage) is an object-oriented relational database that provides facilities for high-volume NMR data archival, organization of analyses, and dissemination of results to the public domain by automatic preparation of the header files required for submission of data to the BioMagResBank (BMRB). The current version of SPINS coordinates the process from data collection to BMRB deposition of raw NMR data by standardizing and integrating the storage and retrieval of these data in a local laboratory file system. Additional facilities include a data mining query tool, graphical database administration tools, and a NMRStar v2. 1.1 file generator. SPINS also includes a user-friendly internet-based graphical user interface, which is optionally integrated with Varian VNMR NMR data collection software. This paper provides an overview of the data model underlying the SPINS database system, a description of its implementation in Oracle, and an outline of future plans for the SPINS project.
[Question from NMRWiki Q&A forum] Where to find technical information on Varian and Bruker data storage formats?
Where to find technical information on Varian and Bruker data storage formats?
Hello, I would like to find detailed technical info on the binary data storage formats for Varian and Bruker. Could anyone point me to such resources?
I'm involved into a student project where NMR data will be displayed in the web browser. The first thing we'd like to explore is the possibility of processing 1D with javascript, but we first have to be able to read the original data...
I've looked through Varian manuals, but apparently the right one did not pop up in front of me :). Could you suggest -...
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07-22-2011 10:38 AM
Structure Determination in “Shiftless” Solid State NMR of Oriented Protein Samples
Structure Determination in “Shiftless” Solid State NMR of Oriented Protein Samples
Publication year: 2011
Source: Journal of Magnetic Resonance, In Press, Accepted Manuscript, Available online 20 June 2011</br>
Yuanyuan, Yin , Alexander A., Nevzorov</br>
An efficient formalism for calculating protein structures from oriented-sample NMR data in the torsion-angle space is presented. Angular anisotropies of the NMR observables are treated by utilizing an irreducible spherical basis of rotations. An intermediate rotational transformation is introduced that greatly speeds up structural...
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06-21-2011 03:40 PM
[NMR paper] Optimizing oriented planar-supported lipid samples for solid-state protein NMR.
Optimizing oriented planar-supported lipid samples for solid-state protein NMR.
Related Articles Optimizing oriented planar-supported lipid samples for solid-state protein NMR.
Biophys J. 2005 Oct;89(4):2792-805
Authors: Rainey JK, Sykes BD
Sample orientation relative to the static magnetic field of an NMR spectrometer allows study of membrane proteins in the lipid bilayer setting. The straightforward preparation and handling of extremely thin mica substrates with consistent surface properties has prompted us to examine oriented phospholipid...
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12-01-2010 06:56 PM
[NMR paper] Object-oriented approach to drug design enabled by NMR SOLVE: first real-time structu
Object-oriented approach to drug design enabled by NMR SOLVE: first real-time structural tool for characterizing protein-ligand interactions.
Related Articles Object-oriented approach to drug design enabled by NMR SOLVE: first real-time structural tool for characterizing protein-ligand interactions.
J Cell Biochem Suppl. 2001;Suppl 37:99-105
Authors: Sem DS, Yu L, Coutts SM, Jack R
As a result of genomics efforts, the number of protein drug targets is expected to increase by an order of magnitude. Functional genomics efforts are identifying...
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11-19-2010 08:32 PM
[NMR paper] Simulation of NMR data from oriented membrane proteins: practical information for exp
Simulation of NMR data from oriented membrane proteins: practical information for experimental design.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-cellhub.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Simulation of NMR data from oriented membrane proteins: practical information for experimental design.
Biophys J. 1993 Oct;65(4):1460-9
Authors: Sanders CR, Schwonek JP
Several hundred solid state NMR...
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08-22-2010 03:01 AM
Structure-oriented methods for protein NMR data analysis
Structure-oriented methods for protein NMR data analysis
Publication year: 2010
Source: Progress in Nuclear Magnetic Resonance Spectroscopy, In Press, Accepted Manuscript, Available online 3 March 2010</br>
Guillermo A., Bermejo , Miguel, Llinás</br>
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