NMR paper Spidroin-mimetic Engineered Protein Fibers with High Toughness and Minimized Batch-to-batch Variations through ?-sheets Co-assembly

		BioNMR > Educational resources > Journal club
[NMR paper] Spidroin-mimetic Engineered Protein Fibers with High Toughness and Minimized Batch-to-batch Variations through ?-sheets Co-assembly

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

02-07-2024, 02:33 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Spidroin-mimetic Engineered Protein Fibers with High Toughness and Minimized Batch-to-batch Variations through ?-sheets Co-assembly

Spidroin-mimetic Engineered Protein Fibers with High Toughness and Minimized Batch-to-batch Variations through ?-sheets Co-assembly

Angewandte Chemie International Edition, Accepted Article.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability - pnas.org A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability - pnas.org A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability pnas.org Read here	nmrlearner	Online News	0	03-18-2022 12:01 AM
A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability - pnas.org A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability - pnas.org A prototype protein nanocage minimized from carboxysomes with gated oxygen permeability pnas.org Read here	nmrlearner	Online News	0	01-26-2022 10:48 AM
Helium-rich mixtures for improved batch-mode clinical-scale spin-exchange optical pumping of Xenon-129 From The DNP-NMR Blog: Helium-rich mixtures for improved batch-mode clinical-scale spin-exchange optical pumping of Xenon-129 Birchall, Jonathan R., Panayiotis Nikolaou, Robert K. Irwin, Michael J. Barlow, Kaili Ranta, Aaron M. Coffey, Boyd M. Goodson, et al. “Helium-Rich Mixtures for Improved Batch-Mode Clinical-Scale Spin-Exchange Optical Pumping of Xenon-129.” Journal of Magnetic Resonance 315 (June 2020): 106739. https://doi.org/10.1016/j.jmr.2020.106739.	nmrlearner	News from NMR blogs	0	08-26-2020 02:46 PM
[NMR paper] Metabolic variations among low grade and high grade gliomas - profiling by 1h nmr spectroscopy. METABOLIC VARIATIONS AMONG LOW GRADE AND HIGH GRADE GLIOMAS - PROFILING BY 1H NMR SPECTROSCOPY. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles METABOLIC VARIATIONS AMONG LOW GRADE AND HIGH GRADE GLIOMAS - PROFILING BY 1H NMR SPECTROSCOPY. J Proteome Res. 2020 May 11;: Authors: Jothi J, Vanisree AJ, Krishnaswamy R Abstract Altered cellular metabolism is one of the crucial hallmarks of glioma that deserves an exploration, as the metabolites act as...	nmrlearner	Journal club	0	05-13-2020 09:14 PM
[NMR paper] Bioinspired and Mechanically Strong Fibers Based on Engineered Non-Spider Chimeric Proteins Bioinspired and Mechanically Strong Fibers Based on Engineered Non-Spider Chimeric Proteins Angewandte Chemie International Edition, EarlyView. More...	nmrlearner	Journal club	0	03-18-2020 10:42 AM
[NMR paper] High-resolution heteronuclear multi-dimensional NMR spectroscopy in magnetic fields with unknown spatial variations. High-resolution heteronuclear multi-dimensional NMR spectroscopy in magnetic fields with unknown spatial variations. Related Articles High-resolution heteronuclear multi-dimensional NMR spectroscopy in magnetic fields with unknown spatial variations. J Magn Reson. 2014 Feb 20;242C:49-56 Authors: Zhang Z, Huang Y, Smith PE, Wang K, Cai S, Chen Z Abstract Heteronuclear NMR spectroscopy is an extremely powerful tool for determining the structures of organic molecules and is of particular significance in the structural analysis of proteins. In...	nmrlearner	Journal club	0	03-14-2014 06:40 AM
High-resolution heteronuclear multi-dimensional NMR spectroscopy in magnetic fields with unknown spatial variations High-resolution heteronuclear multi-dimensional NMR spectroscopy in magnetic fields with unknown spatial variations Publication date: Available online 20 February 2014 Source:Journal of Magnetic Resonance</br> Author(s): Zhiyong Zhang , Yuqing Huang , Pieter E.S. Smith , Kaiyu Wang , Shuhui Cai , Zhong Chen</br> Heteronuclear NMR spectroscopy is an extremely powerful tool for determining the structures of organic molecules and is of particular significance in the structural analysis of proteins. In order to leverage the method’s potential for structural...	nmrlearner	Journal club	0	02-20-2014 05:15 AM
Self-Assembly of Flexible?-Strands into ImmobileAmyloid-Like ?-Sheets in MembranesAs Revealed by Solid-State 19F NMR Self-Assembly of Flexible?-Strands into ImmobileAmyloid-Like ?-Sheets in MembranesAs Revealed by Solid-State 19F NMR Parvesh Wadhwani, Erik Strandberg, Nico Heidenreich, Jochen Bu?rck, Susanne Fangha?nel and Anne S. Ulrich http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja301328f/aop/images/medium/ja-2012-01328f_0005.gif Journal of the American Chemical Society DOI: 10.1021/ja301328f http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/dpJwN953qQE	nmrlearner	Journal club	0	04-06-2012 01:23 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off