NMR paper A Specialized Polythioamide-Binding Protein Confers Antibiotic Self-Resistance in Anaerobic Bacteria

		BioNMR > Educational resources > Journal club
[NMR paper] A Specialized Polythioamide-Binding Protein Confers Antibiotic Self-Resistance in Anaerobic Bacteria

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-04-2022, 02:39 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

A Specialized Polythioamide-Binding Protein Confers Antibiotic Self-Resistance in Anaerobic Bacteria

A Specialized Polythioamide-Binding Protein Confers Antibiotic Self-Resistance in Anaerobic Bacteria

Angewandte Chemie International Edition, EarlyView.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Deciphering the Binding Interactions between Acinetobacter baumannii ACP and beta-ketoacyl ACP Synthase III to Improve Antibiotic Targeting Using NMR Spectroscopy Deciphering the Binding Interactions between Acinetobacter baumannii ACP and beta-ketoacyl ACP Synthase III to Improve Antibiotic Targeting Using NMR Spectroscopy Fatty acid synthesis is essential for bacterial viability. Thus, fatty acid synthases (FASs) represent effective targets for antibiotics. Nevertheless, multidrug-resistant bacteria, including the human opportunistic bacteria, Acinetobacter baumannii, are emerging threats. Meanwhile, the FAS pathway of A. baumannii is relatively unexplored. Considering that acyl carrier protein (ACP) has an important role in the delivery of fatty...	nmrlearner	Journal club	0	04-03-2021 10:01 PM
Staying ahead of antibiotic resistance: Protein structure research paves the way for more efficient treatment - Phys.org Staying ahead of antibiotic resistance: Protein structure research paves the way for more efficient treatment - Phys.org Staying ahead of antibiotic resistance: Protein structure research paves the way for more efficient treatment Phys.org Read here	nmrlearner	Online News	0	05-18-2020 09:18 PM
PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV - HPCwire PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV - HPCwire http://www.bionmr.com//t2.gstatic.com/images?q=tbn:ANd9GcTOn_Se4BjxkKk8_tjkXPeJJ5nGnCtFVtcjqjopEnoZ5Ht4oserC49fGy1Gc-8eH8A52nGooWPY HPCwire <img alt="" height="1" width="1"> PSC's Bridges Helps Scientists Understand Monkey Protein that Confers Immunity to HIV HPCwire Angela Gronenborn of Pitt and Tatyana Polenova of Delaware used a lab technique called nuclear magnetic resonance (NMR) to study which parts of the virus's capsid protein, called CA, are affected when TRIM5Î± is present. NMR...	nmrlearner	Online News	0	11-25-2018 06:02 AM
[NMR paper] Pretreatment of anaerobic digester samples by hydrochloric acid for solution-state 1H and 13C NMR spectroscopic characterization of organic matter. Pretreatment of anaerobic digester samples by hydrochloric acid for solution-state 1H and 13C NMR spectroscopic characterization of organic matter. Pretreatment of anaerobic digester samples by hydrochloric acid for solution-state 1H and 13C NMR spectroscopic characterization of organic matter. Chemosphere. 2018 Feb 05;199:201-209 Authors: Shakeri Yekta S, Hedenström M, Stehr JE, Dario M, Hertkorn N, Björn A Abstract Pretreatment of anaerobic digester samples by hydrochloric acid (HCl) resulted in removal of Fe-based...	nmrlearner	Journal club	0	02-14-2018 04:47 PM
Alanine 501 Mutations in Penicillin-Binding Protein 2 from Neisseria gonorrhoeae: Structure, Mechanism, and Effectson Cephalosporin Resistance and Biological Fitness Alanine 501 Mutations in Penicillin-Binding Protein 2 from Neisseria gonorrhoeae: Structure, Mechanism, and Effectson Cephalosporin Resistance and Biological Fitness http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b01030/20170216/images/medium/bi-2016-01030j_0008.gif Biochemistry DOI: 10.1021/acs.biochem.6b01030 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/c5Ejo7TQKNU More...	nmrlearner	Journal club	0	02-17-2017 07:32 AM
Unravelling the secret of antibiotic resistance - Phys.Org http://www.bionmr.com//t0.gstatic.com/images?q=tbn:ANd9GcQrSW_2Js0UxyV4CKAVBlZwuQU3gD2nd4WXI7Rz-VO4kgsMKKSJUj3BnyqIwVZVpRpayifLXFM Phys.Org <img alt="" height="1" width="1"> Unravelling the secret of antibiotic resistance Phys.Org A recent Â£17 million investment in some of the best nuclear magnetic resonance and electron microscopy facilities in the world is now enabling scientists to remain at the forefront of research into complex proteins. The University of Leeds has played a ... and more » Unravelling the secret of antibiotic resistance - Phys.Org	nmrlearner	Online News	0	03-25-2016 04:12 PM
NMR Structure and Calcium-Binding Properties of the Tellurite Resistance Protein TerD from Klebsiella pneumoniae. NMR Structure and Calcium-Binding Properties of the Tellurite Resistance Protein TerD from Klebsiella pneumoniae. NMR Structure and Calcium-Binding Properties of the Tellurite Resistance Protein TerD from Klebsiella pneumoniae. J Mol Biol. 2010 Nov 25; Authors: Pan YR, Lou YC, Seven AB, Rizo J, Chen C The tellurium oxyanion, TeO(3)(2-), has been used in the treatment of infectious diseases caused by mycobacteria. However, many pathogenic bacteria show tellurite resistance. Several tellurite resistance genes have been identified, and these genes...	nmrlearner	Journal club	0	11-30-2010 08:14 PM
[NMR paper] Flavonoid binding to a multi-drug-resistance transporter protein: an STD-NMR study. Flavonoid binding to a multi-drug-resistance transporter protein: an STD-NMR study. Related Articles Flavonoid binding to a multi-drug-resistance transporter protein: an STD-NMR study. Anal Bioanal Chem. 2004 Aug;379(7-8):1045-9 Authors: Nissler L, Gebhardt R, Berger S Flavonoids are well known to inhibit the function of the multi-drug-resistance (mdr) transporter by interacting with their ATP binding domains. The precise orientation of these molecules inside the ATP binding pocket is still unclear. We applied the saturation transfer...	nmrlearner	Journal club	0	11-24-2010 09:51 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off