[NMR paper] Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes.
Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes.
Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes.
J Struct Funct Genomics. 2013 Aug 21;
Authors: Pulavarti SV, He Y, Feldmann EA, Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA, Szyperski T
Abstract
High-quality NMR structures of the C-terminal domain comprising residues 484-537 of the 537-residue protein Bacterial chlorophyll subunit B (BchB) from Chlorobium tepidum and residues 9-61 of 61-residue Asr4154 from Nostoc sp. (strain PCC 7120) exhibit a mixed ?/? fold comprised of three ?-helices and a small ?-sheet packed against second ?-helix. These two proteins share 29*% sequence similarity and their structures are globally quite similar. The structures of BchB(484-537) and Asr4154(9-61) are the first representative structures for the large protein family (Pfam) PF08369, a family of unknown function currently containing 610 members in bacteria and eukaryotes. Furthermore, BchB(484-537) complements the structural coverage of the dark-operating protochlorophyllide oxidoreductase.
PMID: 23963952 [PubMed - as supplied by publisher]
Riddle: Gaps in the coverage of Journal of Biomolecular NMR by pubmed
Who can solve the riddle. What is the reason for the gaps in the coverage of Journal of Biomolecular NMR by pubmed. E.g., Journal of Biomolecular NMR 7 (3), 207-213 seems to be missing. Why?
Best regards,
Christian
55
Optimisation of metric matrix embedding by genetic algorithms.
van Kampen AH, Buydens LM, Lucasius CB, Blommers MJ.
J Biomol NMR. 1996 May;7(3):214-24.
Chris. Bart.
NMR Questions and Answers
2
09-22-2012 09:44 PM
[CNS Yahoo group] PDBe introduces UniPDB - a UniProt-PDB sequence-coverage widget
PDBe introduces UniPDB - a UniProt-PDB sequence-coverage widget
Hi all, As part of its recent summer update, the Protein Data Bank in Europe (PDBe; http://pdbe.org) introduced UniPDB (http://pdbe.org/unipdb), a widget for
More...
nmrlearner
News from other NMR forums
0
07-21-2011 10:31 PM
[NMR paper] NMR-based structural characterization of large protein-ligand interactions.
NMR-based structural characterization of large protein-ligand interactions.
Related Articles NMR-based structural characterization of large protein-ligand interactions.
J Biomol NMR. 2002 Feb;22(2):165-73
Authors: Pellecchia M, Meininger D, Dong Q, Chang E, Jack R, Sem DS
Genomic research on target identification and validation has created a great need for methods that rapidly provide detailed structural information on protein-ligand interactions. We developed a suite of NMR experiments as rapid and efficient tools to provide descriptive...
nmrlearner
Journal club
0
11-24-2010 08:49 PM
[NMR paper] Determining the structures of large proteins and protein complexes by NMR.
Determining the structures of large proteins and protein complexes by NMR.
Related Articles Determining the structures of large proteins and protein complexes by NMR.
Trends Biotechnol. 1998 Jan;16(1):22-34
Authors: Clore GM, Gronenborn AM
Recent advances in multidimensional NMR methodology to obtain 1H, 15N and 13C resonance assignments, interproton-distance and torsion-angle restraints, and restraints that characterize long-range order have, coupled with new methods of structure refinement, permitted solution structure of proteins in excess...
nmrlearner
Journal club
0
11-17-2010 11:06 PM
NMR solution structures of clustered abasic site lesions in DNA: structural differenc
NMR solution structures of clustered abasic site lesions in DNA: structural differences between 3'-staggered (-3) and 5'-staggered (+3) bistranded lesions.
Related Articles NMR solution structures of clustered abasic site lesions in DNA: structural differences between 3'-staggered (-3) and 5'-staggered (+3) bistranded lesions.
Biochemistry. 2010 Oct 19;49(41):8978-87
Authors: Hazel RD, de los Santos C
Ionizing radiation produces a distinctive pattern of bistranded clustered lesions in DNA. A relatively low number of clustered lesions may be lethal...
nmrlearner
Journal club
0
11-04-2010 10:07 AM
NMR Solution Structures of Clustered Abasic Site Lesions in DNA: Structural Differenc
NMR Solution Structures of Clustered Abasic Site Lesions in DNA: Structural Differences between 3?-Staggered (-3) and 5?-Staggered (+3) Bistranded Lesions
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi101021e/aop/images/medium/bi-2010-01021e_0010.gif
Biochemistry
DOI: 10.1021/bi101021e
http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/bichaw/~4/GNgtLWuPbdM
More...
nmrlearner
Journal club
0
09-21-2010 06:43 PM
Solid-state NMR and SAXS studies provide a structural basis for the activation of alp
Solid-state NMR and SAXS studies provide a structural basis for the activation of alphaB-crystallin oligomers.
Related Articles Solid-state NMR and SAXS studies provide a structural basis for the activation of alphaB-crystallin oligomers.
Nat Struct Mol Biol. 2010 Aug 29;
Authors: Jehle S, Rajagopal P, Bardiaux B, Markovic S, Kühne R, Stout JR, Higman VA, Klevit RE, van Rossum BJ, Oschkinat H
The small heat shock protein alphaB-crystallin (alphaB) contributes to cellular protection against stress. For decades, high-resolution structural studies on...