NMR paper Solution NMR Provides New Insight into Lipid-Protein Interaction.

		BioNMR > Educational resources > Journal club
[NMR paper] Solution NMR Provides New Insight into Lipid-Protein Interaction.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

06-02-2017, 08:33 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Solution NMR Provides New Insight into Lipid-Protein Interaction.

Related Articles Solution NMR Provides New Insight into Lipid-Protein Interaction.

Biochemistry. 2017 Jun 01;:

Authors: Kucharska I, Tamm LK

PMID: 28569055 [PubMed - as supplied by publisher]

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solution NMR Provides New Insight into Lipid–ProteinInteraction Solution NMR Provides New Insight into Lipid–ProteinInteraction http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00336/20170531/images/medium/bi-2017-003369_0002.gif Biochemistry DOI: 10.1021/acs.biochem.7b00336 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/qo3Aj6vPFcQ More...	nmrlearner	Journal club	0	06-02-2017 05:28 AM
Ligand Binding Properties of the Lentil Lipid TransferProtein: Molecular Insight into the Possible Mechanism of Lipid Uptake Ligand Binding Properties of the Lentil Lipid TransferProtein: Molecular Insight into the Possible Mechanism of Lipid Uptake http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b01079/20170316/images/medium/bi-2016-010796_0006.gif Biochemistry DOI: 10.1021/acs.biochem.6b01079 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/l2vc6bHvg0I More...	nmrlearner	Journal club	0	03-17-2017 08:02 AM
[NMR paper] Structural insight into the interaction of O-acetylserine sulfhydrylase with competitive, peptidic inhibitors by saturation transfer difference-NMR. Structural insight into the interaction of O-acetylserine sulfhydrylase with competitive, peptidic inhibitors by saturation transfer difference-NMR. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-7315-19-Wiley_FullText_120x30_orange.png Related Articles Structural insight into the interaction of O-acetylserine sulfhydrylase with competitive, peptidic inhibitors by saturation transfer difference-NMR. FEBS Lett. 2016 Apr;590(7):943-53 Authors: Benoni R, Pertinhez TA, Spyrakis F, Davalli S, Pellegrino S,...	nmrlearner	Journal club	0	08-31-2016 02:34 PM
Discriminating Lipid– from Protein–CalciumBinding To Understand the Interaction between Recoverin and PhosphatidylglycerolModel Membranes Discriminating Lipid– from Protein–CalciumBinding To Understand the Interaction between Recoverin and PhosphatidylglycerolModel Membranes http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00408/20160610/images/medium/bi-2016-004082_0009.gif Biochemistry DOI: 10.1021/acs.biochem.6b00408 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/AAOxpZR83vg More...	nmrlearner	Journal club	0	06-11-2016 01:09 PM
Evidence from NMR interaction studies challenges the hypothesis of direct lipid transfer from L-FABP to malaria sporozoite protein UIS3 Evidence from NMR interaction studies challenges the hypothesis of direct lipid transfer from L-FABP to malaria sporozoite protein UIS3 Abstract UIS3 is a malaria parasite protein essential for liver stage development of Plasmodium species, presumably localized to the membrane of the parasitophorous vacuole formed in infected cells. It has been recently proposed that the soluble domain of UIS3 interacts with the host liver fatty acid binding protein (L-FABP), providing the parasite with a pathway for importing exogenous lipids required for its rapid growth. This finding may suggest...	nmrlearner	Journal club	0	02-03-2013 09:54 AM
[NMR paper] Probing specific lipid-protein interaction by saturation transfer difference NMR spectroscopy. Probing specific lipid-protein interaction by saturation transfer difference NMR spectroscopy. Related Articles Probing specific lipid-protein interaction by saturation transfer difference NMR spectroscopy. J Am Chem Soc. 2005 Sep 28;127(38):13110-1 Authors: Soubias O, Gawrisch K We studied the interaction of mono- and polyunsaturated phosphatidylcholines with rhodopsin by 1H NMR saturation transfer difference spectroscopy with magic angle spinning (STD-MAS NMR). The results indicate a strong preference for interaction of rhodopsin with the...	nmrlearner	Journal club	0	12-01-2010 06:56 PM
[NMR paper] The solution NMR structure of Antheraea polyphemus PBP provides new insight into pher The solution NMR structure of Antheraea polyphemus PBP provides new insight into pheromone recognition by pheromone-binding proteins. Related Articles The solution NMR structure of Antheraea polyphemus PBP provides new insight into pheromone recognition by pheromone-binding proteins. J Mol Biol. 2004 Mar 19;337(2):443-51 Authors: Mohanty S, Zubkov S, Gronenborn AM Pheromone-binding proteins (PBPs) located in the antennae of male moth species play an important role in olfaction. They are carrier proteins, believed to transport volatile...	nmrlearner	Journal club	0	11-24-2010 09:25 PM
[NMR paper] NMR solution structure of AlcR (1-60) provides insight in the unusual DNA binding pro NMR solution structure of AlcR (1-60) provides insight in the unusual DNA binding properties of this zinc binuclear cluster protein. Related Articles NMR solution structure of AlcR (1-60) provides insight in the unusual DNA binding properties of this zinc binuclear cluster protein. J Mol Biol. 2000 Jan 28;295(4):729-36 Authors: Cerdan R, Cahuzac B, Félenbok B, Guittet E The three-dimensional structure of the DNA-binding domain (residues 1-60) of the ethanol regulon transcription factor AlcR from Aspergillus nidulans has been solved by NMR....	nmrlearner	Journal club	0	11-18-2010 09:15 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off