Silk Structure studied with Nuclear Magnetic Resonance

		BioNMR > Educational resources > Journal club
Silk Structure studied with Nuclear Magnetic Resonance

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

09-29-2012, 11:56 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Silk Structure studied with Nuclear Magnetic Resonance

Silk Structure studied with Nuclear Magnetic Resonance

Publication year: 2012
Source:Progress in Nuclear Magnetic Resonance Spectroscopy

Tetsuo Asakura, Yu Suzuki, Yasumoto Nakazawa, Koji Yazawa, Gregory P. Holland, Jeffery L. Yarger

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR tweet] RT @sciencedaily: Nuclear magnetic resonance with no magnets: Nuclear magnetic resonance (NMR) is a powerful tool for chemic... http://tinyurl.com/6lfyazv RT @sciencedaily: Nuclear magnetic resonance with no magnets: Nuclear magnetic resonance (NMR) is a powerful tool for chemic... http://tinyurl.com/6lfyazv Published by Esceptiquisimo (EsceptiquísimoMéxico) on 2011-05-18T23:24:11Z Source: Twitter	nmrlearner	Twitter NMR	0	05-18-2011 11:33 PM
[NMR tweet] RT @medical_tweets: Nuclear magnetic resonance with no magnets: Nuclear magnetic resonance (NMR) is a powerful tool for chemical analysis .. http://dld.bz/aa5dX RT @medical_tweets: Nuclear magnetic resonance with no magnets: Nuclear magnetic resonance (NMR) is a powerful tool for chemical analysis .. http://dld.bz/aa5dX Published by CVO_ortopedia (C. Virtual Ortopedia) on 2011-05-18T21:49:27Z Source: Twitter	nmrlearner	Twitter NMR	0	05-18-2011 10:30 PM
[NMR tweet] RT @sciencedaily: Nuclear magnetic resonance with no magnets: Nuclear magnetic resonance (NMR) is a powerful tool for chemic... http://tinyurl.com/6lfyazv RT @sciencedaily: Nuclear magnetic resonance with no magnets: Nuclear magnetic resonance (NMR) is a powerful tool for chemic... http://tinyurl.com/6lfyazv Published by JEstebanTorres (JuliánEstebanTorres) on 2011-05-18T18:59:46Z Source: Twitter	nmrlearner	Twitter NMR	0	05-18-2011 07:22 PM
[NMR tweet] Double resonance structure for NMR and EPR measurements: [Technologieangebote] Nuclear magnetic resonance spectr... http://bit.ly/hAuZFq Double resonance structure for NMR and EPR measurements: Nuclear magnetic resonance spectr... http://bit.ly/hAuZFq Published by Vivaldi53 (Walid Chaar) on 2011-03-12T07:54:43Z Source: Twitter	nmrlearner	Twitter NMR	0	03-12-2011 08:03 AM
[NMR tweet] http://www.pulist.net/nuclear-magnetic-resonance-oxford-chemistry-primers-32.html #magnetic #resonance #spectroscopy #corpus Nuclear Mag http://www.pulist.net/nuclear-magnetic-resonance-oxford-chemistry-primers-32.html #magnetic #resonance #spectroscopy #corpus Nuclear Mag Published by pulistbook (pulist books) on 2011-01-05T03:33:12Z Source: Twitter	nmrlearner	Twitter NMR	0	01-05-2011 03:41 AM
[NMR tweet] Homogeneous coexistence of SDW and SC states in CaFe(1-x)Co(x)AsF studied by nuclear magnetic resonance. http://arxiv.org/abs/1012.1432 Homogeneous coexistence of SDW and SC states in CaFe(1-x)Co(x)AsF studied by nuclear magnetic resonance. http://arxiv.org/abs/1012.1432 Published by CondMatPapers (Condensed Matter) on 2010-12-08T02:12:42Z Source: Twitter	nmrlearner	Twitter NMR	0	12-08-2010 02:26 AM
[NMR paper] Structure of the model peptides of Bombyx mori silk-elastin like protein studied with Structure of the model peptides of Bombyx mori silk-elastin like protein studied with solid state NMR. Related Articles Structure of the model peptides of Bombyx mori silk-elastin like protein studied with solid state NMR. Biomacromolecules. 2004 May-Jun;5(3):744-50 Authors: Ohgo K, Kurano TL, Kumashiro KK, Asakura T The peptides (AG)(6)(VPGVG)(AG)(7) and (AG)(5)(VPGVG)(2)(AG)(5) are models for a new type of protein with both composition and properties such as Bombyx mori silk and elastin. In this paper, we report the solid-state NMR results...	nmrlearner	Journal club	0	11-24-2010 09:51 PM
[NMR paper] Structural role of tyrosine in Bombyx mori silk fibroin, studied by solid-state NMR a Structural role of tyrosine in Bombyx mori silk fibroin, studied by solid-state NMR and molecular mechanics on a model peptide prepared as silk I and II. Related Articles Structural role of tyrosine in Bombyx mori silk fibroin, studied by solid-state NMR and molecular mechanics on a model peptide prepared as silk I and II. Magn Reson Chem. 2004 Feb;42(2):258-66 Authors: Asakura T, Suita K, Kameda T, Afonin S, Ulrich AS The influence of the bulky and H-bonding Tyr side-chain on its Ala- and Gly-rich environment in Bombyx mori silk fibroin was...	nmrlearner	Journal club	0	11-24-2010 09:25 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off