NMR paper Sequence-specific 1H-NMR assignment and determination of the secondary structure of b

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[NMR paper] Sequence-specific 1H-NMR assignment and determination of the secondary structure of b

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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08-21-2010, 11:45 PM

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Sequence-specific 1H-NMR assignment and determination of the secondary structure of b

Sequence-specific 1H-NMR assignment and determination of the secondary structure of bovine heart fatty-acid-binding protein.

Related Articles Sequence-specific 1H-NMR assignment and determination of the secondary structure of bovine heart fatty-acid-binding protein.

Eur J Biochem. 1992 Dec 15;210(3):901-10

Authors: Lücke C, Lassen D, Kreienkamp HJ, Spener F, Rüterjans H

The nearly complete sequence-specific 1H resonance assignment of the pI = 4.9 isoform of cytosolic 15-kDa fatty-acid-binding protein from bovine heart (H-FABPc) by homonuclear two-dimensional NMR spectroscopy is presented. Regular secondary structure elements were identified from NOE spectra and the sequence locations of slowly exchanging backbone amide protons. The molecular structure of the protein was found to consist mainly of ten antiparallel beta-strands and two short alpha-helices. The data presented here for the first time for a hydrophobic molecule transporter of the fatty-acid-binding protein type is the basis for a complete tertiary structure determination currently in progress.

PMID: 1483473 [PubMed - indexed for MEDLINE]

Source: PubMed

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