Related ArticlesA routine method for cloning, expressing and purifying A?(1-42) for structural NMR studies.
Amino Acids. 2014 Oct;46(10):2415-26
Authors: Weber DK, Sani MA, Gehman JD
Abstract
Nuclear magnetic resonance (NMR) is a key technology in the biophysicist's toolbox for gaining atomic-level insight into structure and dynamics of biomolecules. Investigation of the amyloid-? peptide (A?) of Alzheimer's disease is one area where NMR has proven useful, and holds even more potential. A barrier to realizing this potential, however, is the expense of the isotopically enriched peptide required for most NMR work. Whereas most biomolecular NMR studies employ biosynthetic methods as a very cost-effective means to obtain isotopically enriched biomolecules, this approach has proven less than straightforward for A?. Furthermore, the notorious propensity of A? to aggregate during purification and handling reduces yields and increases the already relatively high costs of solid phase synthesis methods. Here we report our biosynthetic and purification developments that yield pure, uniformly enriched ¹?N and ¹³C¹?N A?(1-42), in excess of 10 mg/L of culture media. The final HPLC-purified product was stable for long periods, which we characterize by solution-state NMR, thioflavin T assays, circular dichroism, electrospray mass spectrometry, and dynamic light scattering. These developments should facilitate further investigations into Alzheimer's disease, and perhaps misfolding diseases in general.
Automated Method for Purifying Protein:Ligand Complexes - News-Medical.net
Automated Method for Purifying Protein:Ligand Complexes - News-Medical.net
http://www.bionmr.com//t1.gstatic.com/images?q=tbn:ANd9GcQutdD6NnjJDnC9but3zjmMB4bBDLXFw5LX7xJfJWUzs2t8oAX-oS63Npooi2n9ra6w4V88Fp8j
News-Medical.net
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Automated Method for Purifying Protein:Ligand Complexes
News-Medical.net
Common techniques for further analyzing protein:ligand complexes to gain structural information include X-ray crystallography, NMR, and cryo-EM. However, a lack of reproducible and robust separation techniques means the purification of protein:ligand ...
[Question from NMRWiki Q&A forum] shake routine and ncon parameter
shake routine and ncon parameter
Trying to do molecular dynamics with explicit water molecules I came across a problem with SHAKE routine:
shake reference = parameters bonds (hydrogen) (all) tolerance = 1.0e-06 nconstraints=8000end
and error message after this is:
X-PLOR>shake SHAKE> reference = parameters SHAKE> bonds (hydrogen) (all) SELRPN: 7142 atoms have been selected out of 11032 SELRPN: 11032 atoms have been selected out of 11032 SHKSET: reference = parameters %XREFIN-ERR: allocation for SHAKE-constraints exceeded ...
nmrlearner
News from other NMR forums
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10-27-2011 11:42 PM
[NMR software blog] Routine Prediction
Routine Prediction
Not everybody remembers how easy it is and how effective it can be to add (or correct) a few points at the beginning of the FID. Two years ago I explained how Linear Prediction works and how we can extrapolate the FID in both directions. This time I will show a simple practical application.
I have observed that, in recent years, C-13 spectra acquired on Varian instruments require a much-larger-then-it-used-to-be phase correction. When I say correction, I mean first-order phase correction, because the zero-order correction is merely a different way of representing the...
nmrlearner
News from NMR blogs
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12-01-2010 08:36 PM
[NMR paper] Cloning, purification, and preliminary characterization by circular dichroism and NMR
Cloning, purification, and preliminary characterization by circular dichroism and NMR of a carboxyl-terminal domain of the bacteriophage P22 scaffolding protein.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Cloning, purification, and preliminary characterization by circular dichroism and NMR of a carboxyl-terminal domain of the bacteriophage P22...
nmrlearner
Journal club
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08-22-2010 03:31 PM
[NMR paper] Cloning, purification, and preliminary characterization by circular dichroism and NMR
Cloning, purification, and preliminary characterization by circular dichroism and NMR of a carboxyl-terminal domain of the bacteriophage P22 scaffolding protein.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Cloning, purification, and preliminary characterization by circular dichroism and NMR of a carboxyl-terminal domain of the bacteriophage P22...