Relationship between Amphipathic ? Structuresin the ?1 Domain of Apolipoprotein B and the Propertiesof the Secreted Lipoprotein Particles in McA-RH7777 Cells

		BioNMR > Educational resources > Journal club
Relationship between Amphipathic ? Structuresin the ?1 Domain of Apolipoprotein B and the Propertiesof the Secreted Lipoprotein Particles in McA-RH7777 Cells

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

07-28-2017, 10:21 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Relationship between Amphipathic ? Structuresin the ?1 Domain of Apolipoprotein B and the Propertiesof the Secreted Lipoprotein Particles in McA-RH7777 Cells

Relationship between Amphipathic ? Structuresin the ?1 Domain of Apolipoprotein B and the Propertiesof the Secreted Lipoprotein Particles in McA-RH7777 Cells

Biochemistry
DOI: 10.1021/acs.biochem.6b01174

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
High-Density Lipoprotein Biogenesis: Defining theDomains Involved in Human Apolipoprotein A-I Lipidation High-Density Lipoprotein Biogenesis: Defining theDomains Involved in Human Apolipoprotein A-I Lipidation http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00347/20160823/images/medium/bi-2016-00347j_0006.gif Biochemistry DOI: 10.1021/acs.biochem.6b00347 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/GLMxVnllYV8 More...	nmrlearner	Journal club	0	08-24-2016 04:35 AM
[NMR paper] Apolipoprotein-defined and NMR lipoprotein subclasses in the veterans affairs diabetes trial. Apolipoprotein-defined and NMR lipoprotein subclasses in the veterans affairs diabetes trial. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Apolipoprotein-defined and NMR lipoprotein subclasses in the veterans affairs diabetes trial. J Diabetes Complications. 2013 Nov-Dec;27(6):627-32 Authors: Azar M, Lyons TJ, Alaupovic P, Stoner JA, Quiroga C, Kaufman DG, Lopes-Virella M, Klein RL, Jenkins AJ, VADT Study Group Abstract	nmrlearner	Journal club	0	07-02-2014 02:37 PM
New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - PharmiWeb.com (press release) <img alt="" height="1" width="1" /> New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk PharmiWeb.com (press release) The medical community is increasingly aware of the critical role utilizing LDL-P as measured by nuclear magnetic resonance (NMR) spectroscopy to help manage a patientâ??Ã?Ã´s cardiovascular disease risk. The data presented at ACC further validates the need ... and more » New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - PharmiWeb.com (press release) More...	nmrlearner	Online News	0	03-19-2013 12:58 AM
New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - Business Wire (press release) <img alt="" height="1" width="1" /> New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk Business Wire (press release) The medical community is increasingly aware of the critical role utilizing LDL-P as measured by nuclear magnetic resonance (NMR) spectroscopy to help manage a patient's cardiovascular disease risk. The data presented at ACC further validates the need ... New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - Business Wire (press release) More...	nmrlearner	Online News	0	03-13-2013 08:09 AM
New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - MarketWatch (press release) <img alt="" height="1" width="1" /> New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk MarketWatch (press release) The medical community is increasingly aware of the critical role utilizing LDL-P as measured by nuclear magnetic resonance (NMR) spectroscopy to help manage a patient's cardiovascular disease risk. The data presented at ACC further validates the need ... and more » New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - MarketWatch (press release) More...	nmrlearner	Online News	0	03-12-2013 07:09 PM
New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - Fort Mills Times <img alt="" height="1" width="1" /> New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk Fort Mills Times The medical community is increasingly aware of the critical role utilizing LDL-P as measured by nuclear magnetic resonance (NMR) spectroscopy to help manage a patient's cardiovascular disease risk. The data presented at ACC further validates the need ... and more » New Data Further Links Lipoprotein Particles to Cardiovascular Disease Risk - Fort Mills Times More...	nmrlearner	Online News	0	03-12-2013 06:38 AM
Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. J Struct Funct Genomics. 2010 Dec 14; Authors: Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT The conserved Lipoprotein-17 domain of membrane-associated protein Q9PRA0_UREPA from Ureaplasma parvum was selected for structure determination by the Northeast Structural...	nmrlearner	Journal club	0	12-15-2010 12:03 PM
[NMR tweet] Study links Type 2 diabetes to lipoprotein particles - Related ...: Researchers using Study links Type 2 diabetes to lipoprotein particles - Related ...: Researchers using nuclear magnetic resonance s... http://bit.ly/biBcoL Source: Twitter	nmrlearner	Twitter NMR	0	08-14-2010 02:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off