BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 05-14-2023, 01:34 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,732
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default Recent Advances in NMR Protein Structure Prediction with ROSETTA

Recent Advances in NMR Protein Structure Prediction with ROSETTA

Nuclear magnetic resonance (NMR) spectroscopy is a powerful method for studying the structure and dynamics of proteins in their native state. For high-resolution NMR structure determination, the collection of a rich restraint dataset is necessary. This can be difficult to achieve for proteins with high molecular weight or a complex architecture. Computational modeling techniques can complement sparse NMR datasets (
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Recent Advances in Oral and Transdermal Protein Delivery Systems
Recent Advances in Oral and Transdermal Protein Delivery Systems Angewandte Chemie International Edition, Accepted Article. More...
nmrlearner Journal club 0 12-14-2022 05:41 AM
Blind protein structure prediction using accelerated free-energy simulations - Science Advances
Blind protein structure prediction using accelerated free-energy simulations - Science Advances Blind protein structure prediction using accelerated free-energy simulations Science AdvancesWe report a key proof of principle of a new acceleration method for predicting protein structures by molecular ... Read here
nmrlearner Online News 0 04-29-2019 11:03 AM
Blind protein structure prediction using accelerated free-energy simulations - Science Advances
Blind protein structure prediction using accelerated free-energy simulations - Science Advances Blind protein structure prediction using accelerated free-energy simulations Science AdvancesWe report a key proof of principle of a new acceleration method for predicting protein structures by molecular ... Read here
nmrlearner Online News 0 04-09-2019 11:33 PM
Blind protein structure prediction using accelerated free-energy simulations - Science Advances
Blind protein structure prediction using accelerated free-energy simulations - Science Advances Blind protein structure prediction using accelerated free-energy simulations Science AdvancesWe report a key proof of principle of a new acceleration method for predicting protein structures by molecular ... Read here
nmrlearner Online News 0 03-24-2019 10:41 PM
Blind protein structure prediction using accelerated free-energy simulations - Science Advances
Blind protein structure prediction using accelerated free-energy simulations - Science Advances Blind protein structure prediction using accelerated free-energy simulations Science AdvancesWe report a key proof of principle of a new acceleration method for predicting protein structures by molecular ... Read here
nmrlearner Online News 0 01-07-2019 05:49 AM
[NMR paper] Recent advances in protein NMR spectroscopy and their implications in protein therapeutics research.
Recent advances in protein NMR spectroscopy and their implications in protein therapeutics research. Related Articles Recent advances in protein NMR spectroscopy and their implications in protein therapeutics research. Anal Bioanal Chem. 2013 Dec 6; Authors: Wang G, Zhang ZT, Jiang B, Zhang X, Li C, Liu M Abstract Nuclear magnetic resonance (NMR) spectroscopy and X-ray crystallography are the two main methods for protein three-dimensional structure determination at atomic resolution. According to the protein structures deposited in the...
nmrlearner Journal club 0 12-07-2013 01:00 PM
[NMR paper] Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations.
Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations. Related Articles Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations. Chem Soc Rev. 2013 Jul 25; Authors: Toukach FV, Ananikov VP Abstract All living systems are comprised of four fundamental classes of macromolecules - nucleic acids, proteins, lipids, and carbohydrates (glycans). Glycans play a unique role of joining three...
nmrlearner Journal club 0 07-28-2013 07:46 PM
[BMNRC community] CS-ROSETTA: System for chemical shifts based protein structure prediction using ROSETTA
CS-ROSETTA: System for chemical shifts based protein structure prediction using ROSETTA http://spin.niddk.nih.gov/bax/ http://condor.bmrb.wisc.edu/bbee/rosetta/  
nmrlearner News from other NMR forums 0 07-12-2011 08:26 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 12:30 PM.


Map