Related ArticlesReal-Time In-Organism NMR Metabolomics Reveals Different Roles of AMP-Activated Protein Kinase Catalytic Subunits.
Anal Chem. 2020 May 11;:
Authors: Nguyen TTM, An YJ, Cha JW, Ko YJ, Lee H, Chung CH, Jeon SM, Lee J, Park S
Abstract
AMP-activated protein kinase (AMPK in human and AAK in C. elegans) is a master regulator of metabolism. It has many isotypes, but its isotype-dependent functions are largely unknown. By developing real-time in-organism NMR metabolomics for C. elegans, we were able to study different roles of*the isotypic catalytic subunits of AAK/AMPK, AAK-1, and AAK-2 in live worms at the whole organism level. The aak-1 knockout animals exhibited enhanced glucose production under starvation, strikingly opposite to aak-2 knockout animals. Unusually high compensatory expression of the reciprocal isotypes in each KO strain and the results for the double KO animals suggested an unconventional phenotype-genotype relationship and the dominance of aak-2 in glucose production. The gene expression patterns showed that the differential phenotypes of aak-1 KO strain are due to reduced TCA and glycolysis and enhanced gluconeogenesis compared to the aak-2 KO strain. Subsequent 13C-isotope incorporation experiment showed that the glucose production in aak-1 KO occurs through the activation of fatty acid oxidation and glyoxylate shunt. Revealing differential roles of the isotypes of AAK/AMPK, our convenient approach is readily applicable to many C. elegans models for human metabolic diseases.
PMID: 32392040 [PubMed - as supplied by publisher]
Observation of acetyl phosphate formation in mammalian mitochondria using real-time in-organelle NMR metabolomics [Biochemistry]
Observation of acetyl phosphate formation in mammalian mitochondria using real-time in-organelle NMR metabolomics
Wen Jun Xu, He Wen, Han Sun Kim, Yoon-Joo Ko, Seung-Mo Dong, In-Sun Park, Jong In Yook, Sunghyouk Park...
Date: 2018-04-17
Recent studies point out the link between altered mitochondrial metabolism and cancer, and detailed understanding of mitochondrial metabolism requires real-time detection of its metabolites. Employing heteronuclear 2D NMR spectroscopy and 13C3-pyruvate, we propose in-organelle metabolomics that allows for the monitoring of mitochondrial metabolic...
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04-18-2018 01:27 AM
[NMR paper] Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination.
Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.plosone.org-images-pone_120x30.png http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.ncbi.nlm.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Catalytic analysis of APOBEC3G involving real-time NMR spectroscopy reveals nucleic acid determinants for deamination.
PLoS One. 2015;10(4):e0124142
Authors: Kamba K, Nagata T,...
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04-27-2016 01:51 PM
[NMR paper] A Multiplexed NMR-Reporter Approach to Measure Cellular Kinase and Phosphatase Activities in Real-Time.
A Multiplexed NMR-Reporter Approach to Measure Cellular Kinase and Phosphatase Activities in Real-Time.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-pubmed-acspubs.jpg Related Articles A Multiplexed NMR-Reporter Approach to Measure Cellular Kinase and Phosphatase Activities in Real-Time.
J Am Chem Soc. 2015 May 27;137(20):6468-71
Authors: Thongwichian R, Kosten J, Benary U, Rose HM, Stuiver M, Theillet FX, Dose A, Koch B, Yokoyama H, Schwarzer D, Wolf J, Selenko P
Abstract
Cell...
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03-02-2016 07:20 PM
PhD scholarship in Development of DNP-NMR Methods for the Real-Time Investigation of Catalytic Reaction Mechanisms
From The DNP-NMR Blog:
PhD scholarship in Development of DNP-NMR Methods for the Real-Time Investigation of Catalytic Reaction Mechanisms
A 3-year PhD scholarship is available from the 1 September 2015 or as soon as possible thereafter at Department of Chemistry at Technical University of Denmark and DTU Electro.
The project is funded as a part of the Danish National Research Foundation Center of Excellence Center for Hyperpolarized Magnetic Resonance:http://www.dnp.dtu.dk/
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07-14-2015 02:59 AM
A Multiplexed NMR-Reporter Approach to Measure Cellular Kinase and Phosphatase Activities in Real-Time
A Multiplexed NMR-Reporter Approach to Measure Cellular Kinase and Phosphatase Activities in Real-Time
Rossukon Thongwichian, Jonas Kosten, Uwe Benary, Honor May Rose, Marchel Stuiver, Francois-Xavier Theillet, Alexander Dose, Birgit Koch, Hideki Yokoyama, Dirk Schwarzer, Jana Wolf and Philipp Selenko
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.5b02987/20150515/images/medium/ja-2015-029876_0005.gif
Journal of the American Chemical Society
DOI: 10.1021/jacs.5b02987
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA ...
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05-16-2015 01:45 PM
Interfacial enzyme kinetics of a membrane bound kinase analyzed by real-time MAS-NMR.
Interfacial enzyme kinetics of a membrane bound kinase analyzed by real-time MAS-NMR.
Interfacial enzyme kinetics of a membrane bound kinase analyzed by real-time MAS-NMR.
Nat Chem Biol. 2011 Mar 20;
Authors: Ullrich SJ, Hellmich UA, Ullrich S, Glaubitz C
The simultaneous observation of interdependent reactions within different phases as catalyzed by membrane-bound enzymes is still a challenging task. One such enzyme, the Escherichia coli integral membrane protein diacylglycerol kinase (DGK), is a key player in lipid regulation. It catalyzes the...
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03-23-2011 05:41 PM
[NMR paper] NMR backbone assignment of the mitogen-activated protein (MAP) kinase p38.
NMR backbone assignment of the mitogen-activated protein (MAP) kinase p38.
Related Articles NMR backbone assignment of the mitogen-activated protein (MAP) kinase p38.
J Biomol NMR. 2005 Jun;32(2):175
Authors: Vogtherr M, Saxena K, Grimme S, Betz M, Schieborr U, Pescatore B, Langer T, Schwalbe H
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11-25-2010 08:21 PM
[NMR paper] Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optic
Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy.
Related Articles Folding kinetics of the SH3 domain of PI3 kinase by real-time NMR combined with optical spectroscopy.
J Mol Biol. 1998 Feb 27;276(3):657-67
Authors: Guijarro JI, Morton CJ, Plaxco KW, Campbell ID, Dobson CM
The refolding kinetics of the chemically denatured SH3 domain of phosphatidylinositol 3'-kinase (PI3-SH3) have been monitored by real-time one-dimensional 1H NMR coupled with a variety of other biophysical techniques. These...