NMR paper Quantifying Protein–Protein Interactions by Molecular Counting with Mass Photometry

		BioNMR > Educational resources > Journal club
[NMR paper] Quantifying Protein–Protein Interactions by Molecular Counting with Mass Photometry

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-03-2020, 09:41 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Quantifying Protein–Protein Interactions by Molecular Counting with Mass Photometry

Quantifying Protein–Protein Interactions by Molecular Counting with Mass Photometry

Angewandte Chemie International Edition, EarlyView.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Molecular Interactions between a Fluoride Ion Channeland Synthetic Protein Blockers Molecular Interactions between a Fluoride Ion Channeland Synthetic Protein Blockers http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b01272/20180201/images/medium/bi-2017-01272b_0006.gif Biochemistry DOI: 10.1021/acs.biochem.7b01272 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/A_h3QdXg9mI More...	nmrlearner	Journal club	0	02-02-2018 11:31 PM
Quantifying Protection in Disordered Proteins UsingMillisecond Hydrogen Exchange-Mass Spectrometry and Peptic ReferencePeptides Quantifying Protection in Disordered Proteins UsingMillisecond Hydrogen Exchange-Mass Spectrometry and Peptic ReferencePeptides http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b01312/20170726/images/medium/bi-2016-013127_0005.gif Biochemistry DOI: 10.1021/acs.biochem.6b01312 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/T5V5twwkH2k More...	nmrlearner	Journal club	0	07-28-2017 08:34 AM
Quantifying protein dynamics in the psâ??ns time regime by NMR relaxation Quantifying protein dynamics in the psâ??ns time regime by NMR relaxation Abstract Both 15N chemical shift anisotropy (CSA) and sufficiently rapid exchange linebroadening transitions exhibit relaxation contributions that are proportional to the square of the magnetic field. Deconvoluting these contributions is further complicated by residue-dependent variations in protein amide 15N CSA values which have proven difficult to accurately measure. Exploiting recently reported improvements for the implementation of T1 and T1Ï? experiments, field...	nmrlearner	Journal club	0	11-19-2016 08:35 PM
Molecular Interactions of Lipopolysaccharide withan Outer Membrane Protein from Pseudomonas aeruginosa Probed by Solution NMR Molecular Interactions of Lipopolysaccharide withan Outer Membrane Protein from Pseudomonas aeruginosa Probed by Solution NMR http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.6b00630/20160831/images/medium/bi-2016-00630x_0007.gif Biochemistry DOI: 10.1021/acs.biochem.6b00630 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/DHPdhXzKIs8 More...	nmrlearner	Journal club	0	09-01-2016 07:10 AM
[NMR paper] "Rules of Engagement" of Protein-Glycoconjugate Interactions: A Molecular View Achievable by using NMR Spectroscopy and Molecular Modeling. "Rules of Engagement" of Protein-Glycoconjugate Interactions: A Molecular View Achievable by using NMR Spectroscopy and Molecular Modeling. "Rules of Engagement" of Protein-Glycoconjugate Interactions: A Molecular View Achievable by using NMR Spectroscopy and Molecular Modeling. ChemistryOpen. 2016 Aug;5(4):274-96 Authors: Marchetti R, Perez S, Arda A, Imberty A, Jimenez-Barbero J, Silipo A, Molinaro A Abstract Understanding the dynamics of protein-ligand interactions, which lie at the heart of host-pathogen recognition,...	nmrlearner	Journal club	0	08-23-2016 01:22 PM
[NMR paper] Molecular Interactions of Lipopolysaccharide with an Outer Membrane Protein from Pseudomonas aeruginosa Probed by Solution NMR. Molecular Interactions of Lipopolysaccharide with an Outer Membrane Protein from Pseudomonas aeruginosa Probed by Solution NMR. Molecular Interactions of Lipopolysaccharide with an Outer Membrane Protein from Pseudomonas aeruginosa Probed by Solution NMR. Biochemistry. 2016 Aug 17; Authors: Kucharska I, Liang B, Ursini N, Tamm LK Abstract Pseudomonas aeruginosa is an opportunistic human pathogen causing pneumonias that are particularly severe in cystic fibrosis and immunocompromised patients. The outer membrane (OM) of P....	nmrlearner	Journal club	0	08-18-2016 02:38 PM
[NMR paper] Protein-Carbohydrate Interactions Studied by NMR. from Molecular Recognition to Drug Design. Protein-Carbohydrate Interactions Studied by NMR. from Molecular Recognition to Drug Design. Related Articles Protein-Carbohydrate Interactions Studied by NMR. from Molecular Recognition to Drug Design. Curr Protein Pept Sci. 2012 Dec 10; Authors: Fernandez-Alonso MD, Diaz D, Berbis MA, Marcelo F, Jimenez-Barbero J Abstract Diseases that result from infection are, in general, a consequence of specific interactions between a pathogenic organism and the cells. The study of host-pathogen interactions has provided insights for the design of...	nmrlearner	Journal club	0	02-03-2013 10:22 AM
Quantifying Mass Transportduring Polarization ina Li Ion Battery Electrolyte by in Situ 7Li NMR Imaging Quantifying Mass Transportduring Polarization ina Li Ion Battery Electrolyte by in Situ 7Li NMR Imaging Matilda Klett, Marianne Giesecke, Andreas Nyman, Fredrik Hallberg, Rakel Wreland Lindstro?m, Go?ran Lindbergh and Istva?n Furo? http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja305461j/aop/images/medium/ja-2012-05461j_0005.gif Journal of the American Chemical Society DOI: 10.1021/ja305461j http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/L0h13exeUew	nmrlearner	Journal club	0	09-01-2012 03:18 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off