BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 11-01-2013, 03:48 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,777
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default ProteinDielectric Constants Determined from NMR ChemicalShift Perturbations

ProteinDielectric Constants Determined from NMR ChemicalShift Perturbations

Predrag Kukic, Damien Farrell, Lawrence P. McIntosh, Bertrand Garci?a-Moreno E., Kristine Steen Jensen, Zigmantas Toleikis, Kaare Teilum and Jens Erik Nielsen



Journal of the American Chemical Society
DOI: 10.1021/ja406995j




Source: Journal of the American Chemical Society
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy.
From Mendeley Biomolecular NMR group: Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al. We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature,...
nmrlearner Journal club 0 10-17-2013 12:49 PM
[NMR paper] Protein Dielectric Constants Determined from NMR Chemical Shift Perturbations.
Protein Dielectric Constants Determined from NMR Chemical Shift Perturbations. Protein Dielectric Constants Determined from NMR Chemical Shift Perturbations. J Am Chem Soc. 2013 Oct 14; Authors: Kukic P, Farrell D, McIntosh LP, Garcia-Moreno E B, Jensen KS, Toleikis Z, Teilum K, Nielsen JE Abstract Understanding the connection between protein structure and function requires a quantitative understanding of electrostatic effects. Structure-based electrostatics calculations are essential for this purpose, but their use have been limited by a...
nmrlearner Journal club 0 10-16-2013 11:22 AM
[NMR paper] Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy.
From Mendeley Biomolecular NMR group: Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al. We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature,...
nmrlearner Journal club 0 01-10-2013 04:46 PM
[NMR paper] Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy.
From Mendeley Biomolecular NMR group: Mapping Molecular Perturbations by a New Form of Two-Dimensional Spectroscopy. Journal of the American Chemical Society (2012). Eriks Kupce, Ray Freeman et al. We propose a new general form of two-dimensional spectroscopy where the indirect 'evolution' dimension is derived using the Radon transform. This idea is applicable to several types of spectroscopy but is illustrated here for the case of NMR. This 'projection spectroscopy' displays characteristic correlation peaks that highlight perturbations of chemical shifts caused by temperature,...
nmrlearner Journal club 0 12-12-2012 01:44 AM
Increased precision for analysis of proteinā??ligand dissociation constants determined from chemical shift titrations
Increased precision for analysis of proteinā??ligand dissociation constants determined from chemical shift titrations Abstract NMR is ideally suited for the analysis of proteinā??protein and protein ligand interactions with dissociation constants ranging from ~2 Ī¼M to ~1 mM, and with kinetics in the fast exchange regime on the NMR timescale. For the determination of dissociation constants (K D ) of 1:1 proteinā??protein or proteinā??ligand interactions using NMR, the protein and ligand concentrations must necessarily be similar in magnitude to the K D , and nonlinear least squares...
nmrlearner Journal club 0 05-01-2012 07:06 AM
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins
Pulsed Pressure Perturbations, an Extra Dimension in NMR Spectroscopy of Proteins Werner Kremer, Martin Arnold, Claudia Elisabeth Munte, Rainer Hartl, Markus Beck Erlach, Joerg Koehler, Alexander Meier and Hans Robert Kalbitzer http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja2050698/aop/images/medium/ja-2011-050698_0003.gif Journal of the American Chemical Society DOI: 10.1021/ja2050698 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/zlQj5rBkfDs
nmrlearner Journal club 0 08-11-2011 02:24 AM
[NMR paper] 19F NMR study of protein-induced rhombic perturbations on the electronic structure of
19F NMR study of protein-induced rhombic perturbations on the electronic structure of the active site of myoglobin. Related Articles 19F NMR study of protein-induced rhombic perturbations on the electronic structure of the active site of myoglobin. J Biol Inorg Chem. 2000 Aug;5(4):455-62 Authors: Yamamoto Y, Hirai Y, Suzuki A A novel C2-symmetric ring-fluorinated hemin, 13,17-bis(2-carboxyethyl)-2,8,12,18-tetramethyl-3,7-difluoroporphyrin atoiron(III), has been synthesized and was incorporated into sperm whale apomyoglobin to investigate...
nmrlearner Journal club 0 11-19-2010 08:29 PM
[NMR paper] TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagne
TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe. Related Articles TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe. Biochemistry. 1998 Jul 7;37(27):9650-7 Authors: Arumugam S, Hemme CL, Yoshida N, Suzuki K, Nagase H, Berjanskii M, Wu B, Van Doren SR Surfaces of the 173 residue catalytic domain of human matrix metalloproteinase 3 (MMP-3(DeltaC)) affected by binding of the N-terminal, 126 residue inhibitory domain of human TIMP-1...
nmrlearner Journal club 0 11-17-2010 11:15 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 12:10 AM.


Map