Related ArticlesProtein dynamics and function from solution state NMR spectroscopy.
Q Rev Biophys. 2016 Jan;49:e6
Authors: Kovermann M, Rogne P, Wolf-Watz M
Abstract
It is well-established that dynamics are central to protein function; their importance is implicitly acknowledged in the principles of the Monod, Wyman and Changeux model of binding cooperativity, which was originally proposed in 1965. Nowadays the concept of protein dynamics is formulated in terms of the energy landscape theory, which can be used to understand protein folding and conformational changes in proteins. Because protein dynamics are so important, a key to understanding protein function at the molecular level is to design experiments that allow their quantitative analysis. Nuclear magnetic resonance (NMR) spectroscopy is uniquely suited for this purpose because major advances in theory, hardware, and experimental methods have made it possible to characterize protein dynamics at an unprecedented level of detail. Unique features of NMR include the ability to quantify dynamics (i) under equilibrium conditions without external perturbations, (ii) using many probes simultaneously, and (iii) over large time intervals. Here we review NMR techniques for quantifying protein dynamics on fast (ps-ns), slow (?s-ms), and very slow (s-min) time scales. These techniques are discussed with reference to some major discoveries in protein science that have been made possible by NMR spectroscopy.
PMID: 27088887 [PubMed - as supplied by publisher]
[NMR paper] Intermolecular Interactions and Protein Dynamics by Solid-State NMR Spectroscopy.
Intermolecular Interactions and Protein Dynamics by Solid-State NMR Spectroscopy.
http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary_FullTextOnline_120x27.gif http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--media.wiley.com-assets-2250-98-WileyOnlineLibrary_FullTextOnline_120x27.gif Related Articles Intermolecular Interactions and Protein Dynamics by Solid-State NMR Spectroscopy.
Angew Chem Int Ed Engl. 2015 Nov 2;
Authors: Lamley JM, ึster C, Stevens RA,...
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11-09-2015 02:00 AM
Exploring the Backbone Dynamics of Native Spider Silk Proteins in Black Widow Silk Glands with Solution-state NMR Spectroscopy
Exploring the Backbone Dynamics of Native Spider Silk Proteins in Black Widow Silk Glands with Solution-state NMR Spectroscopy
Publication date: Available online 13 June 2014
Source:Polymer</br>
Author(s): Dian Xu , Jeffery L. Yarger , Gregory P. Holland</br>
Spider dragline silk is an outstanding biopolymer with a strength that exceeds steel by weight and a toughness greater than high-performance fibers like Kevlar. For this reason, understanding how a spider converts the gel-like, aqueous protein spinning dope within the major ampullate (MA) gland into a super...
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06-14-2014 12:53 AM
[NMR paper] Characterization of membrane protein function by solid-state NMR spectroscopy.
Characterization of membrane protein function by solid-state NMR spectroscopy.
Characterization of membrane protein function by solid-state NMR spectroscopy.
Curr Opin Struct Biol. 2014 Apr 25;27C:48-55
Authors: Baker LA, Baldus M
Abstract
Membrane proteins are an important class of biological molecules whose association with lipid bilayers and intrinsic molecular mobility can complicate their structural study by high-resolution methods. As different experimental techniques require different membrane mimetics, it can be...
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05-29-2014 09:35 PM
Characterization of membrane protein function by solid-state NMR spectroscopy
Characterization of membrane protein function by solid-state NMR spectroscopy
Publication date: August 2014
Source:Current Opinion in Structural Biology, Volume 27</br>
Author(s): Lindsay A Baker , Marc Baldus</br>
Membrane proteins are an important class of biological molecules whose association with lipid bilayers and intrinsic molecular mobility can complicate their structural study by high-resolution methods. As different experimental techniques require different membrane mimetics, it can be challenging to relate membrane protein structure to function. This...
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05-25-2014 06:31 PM
Structural Dynamics Studies of Fatty Acid Binding Protein-4 by Solution NMR Spectroscopy
Structural Dynamics Studies of Fatty Acid Binding Protein-4 by Solution NMR Spectroscopy
Publication date: 28 January 2014
Source:Biophysical Journal, Volume 106, Issue 2, Supplement 1</br>
Author(s): Adedolapo Ojoawo , Choua Xiong , Kim N. Ha</br>
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01-29-2014 12:50 AM
[NMR paper] Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy.
From Mendeley Biomolecular NMR group:
Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy.
Nature methods (2011). Volume: 8, Issue: 11. Pages: 919-31. Jameson R Bothe, Evgenia N Nikolova, Catherine D Eichhorn, Jeetender Chugh, Alexandar L Hansen, Hashim M Al-Hashimi et al.
Many recently discovered noncoding RNAs do not fold into a single native conformation but sample many different conformations along their free-energy landscape to carry out their biological function. Here we review solution-state NMR techniques that measure the structural,...
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10-12-2012 09:58 AM
[NMR paper] Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy.
From Mendeley Biomolecular NMR group:
Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy.
Nature methods (2011). Volume: 8, Issue: 11. Pages: 919-31. Jameson R Bothe, Evgenia N Nikolova, Catherine D Eichhorn, Jeetender Chugh, Alexandar L Hansen, Hashim M Al-Hashimi et al.
Many recently discovered noncoding RNAs do not fold into a single native conformation but sample many different conformations along their free-energy landscape to carry out their biological function. Here we review solution-state NMR techniques that measure the structural,...
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08-24-2012 08:01 PM
[NMR paper] Structure, dynamics and function of the outer membrane protein A (OmpA) and influenza
Structure, dynamics and function of the outer membrane protein A (OmpA) and influenza hemagglutinin fusion domain in detergent micelles by solution NMR.
Related Articles Structure, dynamics and function of the outer membrane protein A (OmpA) and influenza hemagglutinin fusion domain in detergent micelles by solution NMR.
FEBS Lett. 2003 Nov 27;555(1):139-43
Authors: Tamm LK, Abildgaard F, Arora A, Blad H, Bushweller JH
Recent progress from our laboratories to determine structures of small membrane proteins (up to 20 kDa) in detergent micelles...