PrimaryTransfer Step in the Light-Driven Ion PumpBacteriorhodopsin: An Irreversible U-Turn Revealed by DynamicNuclear Polarization-Enhanced Magic Angle Spinning NMR

		BioNMR > Educational resources > Journal club
PrimaryTransfer Step in the Light-Driven Ion PumpBacteriorhodopsin: An Irreversible U-Turn Revealed by DynamicNuclear Polarization-Enhanced Magic Angle Spinning NMR

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

03-13-2018, 04:24 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

PrimaryTransfer Step in the Light-Driven Ion PumpBacteriorhodopsin: An Irreversible U-Turn Revealed by DynamicNuclear Polarization-Enhanced Magic Angle Spinning NMR

PrimaryTransfer Step in the Light-Driven Ion PumpBacteriorhodopsin: An Irreversible U-Turn Revealed by DynamicNuclear Polarization-Enhanced Magic Angle Spinning NMR

Qing Zhe Ni, Thach V. Can, Eugenio Daviso, Marina Belenky, Robert G. Griffin and Judith Herzfeld

Journal of the American Chemical Society
DOI: 10.1021/jacs.8b00022

Source: Journal of the American Chemical Society

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Directly vs Indirectly Enhanced 13C in Dynamic Nuclear Polarization Magic Angle Spinning NMR Experiments of Nonionic Surfactant Systems From The DNP-NMR Blog: Directly vs Indirectly Enhanced 13C in Dynamic Nuclear Polarization Magic Angle Spinning NMR Experiments of Nonionic Surfactant Systems p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} p.p1 {margin: 0.0px 0.0px 0.0px 36.0px; text-indent: -36.0px; font: 12.0px Helvetica} Hoffmann, M.M., et al., Directly vs Indirectly Enhanced 13C in Dynamic Nuclear Polarization Magic Angle Spinning NMR Experiments of Nonionic Surfactant Systems. The Journal of Physical Chemistry C, 2017. 121(4): p. 2418-2427. ...	nmrlearner	News from NMR blogs	0	04-07-2017 02:45 PM
Dynamic nuclear polarization at 40 kHz magic angle spinning #DNPNMR From The DNP-NMR Blog: Dynamic nuclear polarization at 40 kHz magic angle spinning #DNPNMR Chaudhari, S.R., et al., Dynamic nuclear polarization at 40 kHz magic angle spinning. Phys Chem Chem Phys, 2016. 18(15): p. 10616-22. http://www.ncbi.nlm.nih.gov/pubmed/27035630	nmrlearner	News from NMR blogs	0	08-23-2016 01:02 AM
Studyingthe Conformation of a Silaffin-Derived PentalysinePeptide Embedded in Bioinspired Silica using Solution and DynamicNuclear Polarization Magic-Angle Spinning NMR Studyingthe Conformation of a Silaffin-Derived PentalysinePeptide Embedded in Bioinspired Silica using Solution and DynamicNuclear Polarization Magic-Angle Spinning NMR Yasmin Geiger, Hugo E. Gottlieb, U?mit Akbey, Hartmut Oschkinat and Gil Goobes http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/jacs.5b07809/20160419/images/medium/ja-2015-07809a_0001.gif Journal of the American Chemical Society DOI: 10.1021/jacs.5b07809 http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/T8sbiifgCd8	nmrlearner	Journal club	0	04-21-2016 06:00 AM
Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning From The DNP-NMR Blog: Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning Thurber, K. and R. Tycko, Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning. J Magn Reson, 2016. 264: p. 99-106. http://www.ncbi.nlm.nih.gov/pubmed/26920835	nmrlearner	News from NMR blogs	0	04-11-2016 07:16 PM
Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning Low-temperature dynamic nuclear polarization with helium-cooled samples and nitrogen-driven magic-angle spinning Publication date: March 2016 Source:Journal of Magnetic Resonance, Volume 264</br> Author(s): Kent Thurber, Robert Tycko</br> We describe novel instrumentation for low-temperature solid state nuclear magnetic resonance (NMR) with dynamic nuclear polarization (DNP) and magic-angle spinning (MAS), focusing on aspects of this instrumentation that have not been described in detail in previous publications. We characterize the performance of an extended...	nmrlearner	Journal club	0	02-24-2016 01:30 AM
[NMR paper] Broadband homonuclear correlation spectroscopy driven by combined R2n(v) sequences under fast magic angle spinning for NMR structural analysis of organic and biological solids. Broadband homonuclear correlation spectroscopy driven by combined R2n(v) sequences under fast magic angle spinning for NMR structural analysis of organic and biological solids. Related Articles Broadband homonuclear correlation spectroscopy driven by combined R2n(v) sequences under fast magic angle spinning for NMR structural analysis of organic and biological solids. J Magn Reson. 2013 Apr 28;232C:18-30 Authors: Hou G, Yan S, Trébosc J, Amoureux JP, Polenova T Abstract We recently described a family of experiments for R2n(v) Driven Spin...	nmrlearner	Journal club	0	05-21-2013 02:34 PM
[NMR paper] Broadband Homonuclear Correlation Spectroscopy Driven by Combined R2nv Sequences under Fast Magic Angle Spinning for NMR Structural Analysis of Organic and Biological Solids Broadband Homonuclear Correlation Spectroscopy Driven by Combined R2nv Sequences under Fast Magic Angle Spinning for NMR Structural Analysis of Organic and Biological Solids Publication date: Available online 28 April 2013 Source:Journal of Magnetic Resonance</br> Author(s): Guangjin Hou , Si Yan , Julien Trebosc , Jean-Paul Amoureux , Tatyana Polenova</br> We recently described a family of experiments for R2 n v Driven Spin Diffusion (RDSD) spectroscopy suitable for homonuclear correlation experiments under fast MAS conditions (J. Am. Chem. Soc., 133, 2011,...	nmrlearner	Journal club	0	04-29-2013 06:00 AM
[NMR paper] 13C magic angle spinning NMR study of the light-induced and temperature-dependent cha 13C magic angle spinning NMR study of the light-induced and temperature-dependent changes in Rhodobacter sphaeroides R26 reaction centers enriched in tyrosine. Related Articles 13C magic angle spinning NMR study of the light-induced and temperature-dependent changes in Rhodobacter sphaeroides R26 reaction centers enriched in tyrosine. Biochemistry. 1992 Nov 17;31(45):11038-49 Authors: Fischer MR, de Groot HJ, Raap J, Winkel C, Hoff AJ, Lugtenburg J Solid-state 13C magic angle spinning (MAS) NMR has been used to investigate...	nmrlearner	Journal club	0	08-21-2010 11:45 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off