Related ArticlesPolarization transfer by cross-correlated relaxation in solution NMR with very large molecules.
Proc Natl Acad Sci U S A. 1999 Apr 27;96(9):4918-23
Authors: Riek R, Wider G, Pervushin K, Wüthrich K
In common multidimensional NMR experiments for studies of biological macromolecules in solution, magnetization transfers via spin-spin couplings [insensitive nuclei enhanced by polarization transfer (INEPT)] are key elements of the pulse schemes. For molecular weights beyond 100,000, transverse relaxation during the transfer time may become a limiting factor. This paper presents a transfer technique for work with big molecules, cross relaxation-enhanced polarization transfer (CRINEPT), which largely reduces the size limitation of INEPT transfers with the use of cross-correlated relaxation-induced polarization transfer. The rate of polarization transfer by cross-correlated relaxation is proportional to the rotational correlation time, so that it becomes a highly efficient transfer mechanism for solution NMR with very high molecular weights. As a first implementation, [15N,1H]-correlation experiments were designed that make use of cross-correlation between dipole-dipole coupling and chemical shift anisotropy of the 15N---1H-moieties for both CRINEPT and transverse relaxation-optimized spectroscopy (TROSY). When compared with INEPT-based [15N,1H]-TROSY, these experiments yielded up to 3-fold signal enhancement for amide groups of a 110,000-Da protein in aqueous solution at 4 degrees C. CRINEPT opens avenues for solution NMR with supramolecular structures such as membrane proteins solubilized in micelles or lipid vesicles, proteins attached to nucleic acid fragments, or oligomeric proteins.
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nmrlearner
NMR pictures
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11-15-2011 10:36 AM
NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA
NMR Cross-Correlated Relaxation Rates Reveal Ion Coordination Sites in DNA
Radovan Fiala, Nad?a S?pac?kova?, Silvie Foldynova?-Tranti?rkova?, Jir?i? S?poner, Vladimi?r Sklena?r? and Luka?s? Tranti?rek
http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja202397p/aop/images/medium/ja-2011-02397p_0003.gif
Journal of the American Chemical Society
DOI: 10.1021/ja202397p
http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA
http://feeds.feedburner.com/~r/acs/jacsat/~4/vJtIag8UbVQ
nmrlearner
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08-13-2011 02:47 AM
How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar Cαâ??Câ?²/HNâ??N cross-correlated relaxation
How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar Cαâ??Câ?²/HNâ??N cross-correlated relaxation
Abstract Highly precise and accurate measurements of very small NMR cross-correlated relaxation rates, namely those between protein HiNâ??Ni and Ciâ??1αâ??Ciâ??1â?² dipoles, are demonstrated with an error of 0.03 sâ??1 for GB3. Because the projection angles between the two dipole vectors are very close to the magic angle the rates range only from â??0.2 to +0.2 sâ??1. Small changes of the average vector orientations have a dramatic impact on the relative values....
nmrlearner
Journal club
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06-06-2011 12:53 AM
How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar C(?)-C'/H (N)-N cross-correlated relaxation.
How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar C(?)-C'/H (N)-N cross-correlated relaxation.
How uniform is the peptide plane geometry? A high-accuracy NMR study of dipolar C(?)-C'/H (N)-N cross-correlated relaxation.
J Biomol NMR. 2011 Jun 3;
Authors: Vögeli B
Highly precise and accurate measurements of very small NMR cross-correlated relaxation rates, namely those between protein H (i) (N) -N(i) and C (i-1) (?) -C(i-1)' dipoles, are demonstrated with an error of 0.03*s(-1) for GB3. Because the projection angles...
nmrlearner
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06-04-2011 11:26 AM
Side chain: backbone projections in aromatic and ASX residues from NMR cross-correlated relaxation
Side chain: backbone projections in aromatic and ASX residues from NMR cross-correlated relaxation
Abstract The measurements of cross-correlated relaxation rates between HNâ??N and Cβâ??Cγ intraresidual and sequential dipolar interactions is demonstrated in ASN, ASP and aromatic residues. The experiment can be used for deuterated samples and no additional knowledge such as Karplus parametrizations is required for the analysis. The data constitutes a new type of information since no other method relates the Cβâ??Cγ bond to HNâ??N. Using this method the dominant populations of rotamer...
nmrlearner
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01-09-2011 12:46 PM
[NMR paper] Cross-correlated relaxation enhanced 1H[bond]13C NMR spectroscopy of methyl groups in
Cross-correlated relaxation enhanced 1H13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.
Related Articles Cross-correlated relaxation enhanced 1H13C NMR spectroscopy of methyl groups in very high molecular weight proteins and protein complexes.
J Am Chem Soc. 2003 Aug 27;125(34):10420-8
Authors: Tugarinov V, Hwang PM, Ollerenshaw JE, Kay LE
A comparison of HSQC and HMQC pulse schemes for recording (1)H(13)C correlation maps of protonated methyl groups in highly deuterated proteins is presented....
nmrlearner
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11-24-2010 09:16 PM
[NMR paper] Automated NMR determination of protein backbone dihedral angles from cross-correlated
Automated NMR determination of protein backbone dihedral angles from cross-correlated spin relaxation.
Related Articles Automated NMR determination of protein backbone dihedral angles from cross-correlated spin relaxation.
J Biomol NMR. 2002 Apr;22(4):349-63
Authors: Kloiber K, Schüler W, Konrat R
The simultaneous interpretation of a suite of dipole-dipole and dipole-CSA cross-correlation rates involving the backbone nuclei 13Calpha, 1Halpha, 13CO, 15N and 1HN can be used to resolve the ambiguities associated with each individual...
nmrlearner
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11-24-2010 08:49 PM
[NMR paper] Application of cross-correlated NMR spin relaxation to the zinc-finger protein CRP2(L
Application of cross-correlated NMR spin relaxation to the zinc-finger protein CRP2(LIM2): evidence for collective motions in LIM domains.
Related Articles Application of cross-correlated NMR spin relaxation to the zinc-finger protein CRP2(LIM2): evidence for collective motions in LIM domains.
Biochemistry. 2001 Aug 14;40(32):9596-604
Authors: Schüler W, Kloiber K, Matt T, Bister K, Konrat R
The solution structure of quail CRP2(LIM2) was significantly improved by using an increased number of NOE constraints obtained from a 13C,15N-labeled...