BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-21-2010, 10:48 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,775
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default pH-dependent redox activity and fluxionality of the copper site in amicyanin from Thi

pH-dependent redox activity and fluxionality of the copper site in amicyanin from Thiobacillus yersutus as studied by 300- and 600- MHz 1H NMR.

Related Articles pH-dependent redox activity and fluxionality of the copper site in amicyanin from Thiobacillus yersutus as studied by 300- and 600- MHz 1H NMR.

J Biol Chem. 1990 Feb 15;265(5):2768-74

Authors: Lommen A, Canters GW

The kinetics of the deuteronation of one of the copper ligand histidines of the reduced Type I blue-copper protein amicyanin from Thiobacillus versutus was studied as a function of temperature by 300- and 600- MHz 1H NMR. The NMR data were analyzed with the help of a three site exchange model. Deuteron exchange between the histidine ligand and the solution appears to be catalyzed by phosphate. After deuteronation the histidine can occur in two conformations. The electron self-exchange rate of amicyanin was determined as a function of temperature and ionic strength. At 298 K, pD = 8.6, I = 0.05 M, the ese rate amounts to 1.3 x 10(5) M-1 S-1. The activation parameters amount to delta H not equal to = (52 +/- 3) kJ/mol and delta S not equal to = (26 +/- 9) J/mol.K. The dependence of the ese rate on ionic strength is small. The deuteronated amicyanin appears to be redox-inactive. The experimental findings clearly distinguish amicyanin from other classes of blue-copper proteins like the azurins and the pseudo-azurins.

PMID: 2303425 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Selective observation of the Cu(I)-amicyanin metal site by paramagnetic NMR on partia
Selective observation of the Cu(I)-amicyanin metal site by paramagnetic NMR on partially oxidised samples. Selective observation of the Cu(I)-amicyanin metal site by paramagnetic NMR on partially oxidised samples. J Biomol NMR. 1997 Apr;9(3):299-305 Authors: Salgado J, Kalverda AP, Canters GW The relaxation enhancement caused by paramagnetic copper(II) is used to observe selectivelythe metal site of copper(I)-amicyanin by one- and two-dimensional NMR spectroscopy. Theparamagnetic effect is communicated to the diamagnetic protein through the...
nmrlearner Journal club 0 08-22-2010 03:31 PM
[NMR paper] Selective observation of the Cu(I)-amicyanin metal site by paramagnetic NMR on partia
Selective observation of the Cu(I)-amicyanin metal site by paramagnetic NMR on partially oxidised samples. Selective observation of the Cu(I)-amicyanin metal site by paramagnetic NMR on partially oxidised samples. J Biomol NMR. 1997 Apr;9(3):299-305 Authors: Salgado J, Kalverda AP, Canters GW The relaxation enhancement caused by paramagnetic copper(II) is used to observe selectivelythe metal site of copper(I)-amicyanin by one- and two-dimensional NMR spectroscopy. Theparamagnetic effect is communicated to the diamagnetic protein through the...
nmrlearner Journal club 0 08-22-2010 03:03 PM
[NMR paper] Redox-dependent 1H NMR spectral features and tertiary structural constraints on the C
Redox-dependent 1H NMR spectral features and tertiary structural constraints on the C-terminal region of putidaredoxin. Related Articles Redox-dependent 1H NMR spectral features and tertiary structural constraints on the C-terminal region of putidaredoxin. Biochemistry. 1994 May 31;33(21):6433-41 Authors: Pochapsky TC, Ratnaswamy G, Patera A Putidaredoxin (Pdx) is a 106-residue Fe2S2 ferredoxin which acts as the physiological reductant and effector of cytochrome P-450cam. Pdx has two accessible oxidation states, Fe+3-Fe+3 (oxidized) and...
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] Thiol/disulfide formation associated with the redox activity of the [Fe3S4] cluster o
Thiol/disulfide formation associated with the redox activity of the cluster of Desulfovibrio gigas ferredoxin II. 1H NMR and Mössbauer spectroscopic study. Related Articles Thiol/disulfide formation associated with the redox activity of the cluster of Desulfovibrio gigas ferredoxin II. 1H NMR and Mössbauer spectroscopic study. J Biol Chem. 1994 Mar 18;269(11):8052-8 Authors: Macedo AL, Moura I, Surerus KK, Papaefthymiou V, Liu MY, LeGall J, Münck E, Moura JJ Desulfovibrio gigas ferredoxin II (FdII) is a small protein (alpha 4 subunit...
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] Redox-dependent 1H NMR spectral features and tertiary structural constraints on the C
Redox-dependent 1H NMR spectral features and tertiary structural constraints on the C-terminal region of putidaredoxin. Related Articles Redox-dependent 1H NMR spectral features and tertiary structural constraints on the C-terminal region of putidaredoxin. Biochemistry. 1994 May 31;33(21):6433-41 Authors: Pochapsky TC, Ratnaswamy G, Patera A Putidaredoxin (Pdx) is a 106-residue Fe2S2 ferredoxin which acts as the physiological reductant and effector of cytochrome P-450cam. Pdx has two accessible oxidation states, Fe+3-Fe+3 (oxidized) and...
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] Thiol/disulfide formation associated with the redox activity of the [Fe3S4] cluster o
Thiol/disulfide formation associated with the redox activity of the cluster of Desulfovibrio gigas ferredoxin II. 1H NMR and Mössbauer spectroscopic study. Related Articles Thiol/disulfide formation associated with the redox activity of the cluster of Desulfovibrio gigas ferredoxin II. 1H NMR and Mössbauer spectroscopic study. J Biol Chem. 1994 Mar 18;269(11):8052-8 Authors: Macedo AL, Moura I, Surerus KK, Papaefthymiou V, Liu MY, LeGall J, Münck E, Moura JJ Desulfovibrio gigas ferredoxin II (FdII) is a small protein (alpha 4 subunit...
nmrlearner Journal club 0 08-22-2010 03:33 AM
[NMR paper] Electrostatic recognition in redox copper proteins: a 1H NMR study of the protonation
Electrostatic recognition in redox copper proteins: a 1H NMR study of the protonation behavior of His 19 in oxidized and reduced Cu,Zn superoxide dismutase. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Electrostatic recognition in redox copper proteins: a 1H NMR study of the protonation behavior of His 19 in oxidized and reduced Cu,Zn superoxide dismutase. Arch Biochem Biophys. 1993 Mar;301(2):244-50 Authors: Desideri A, Polticelli F, Falconi M, Sette M, Ciriolo MR, Paci M,...
nmrlearner Journal club 0 08-21-2010 11:53 PM
[NMR paper] 1H- and 13C-NMR investigation of redox-state-dependent and temperature-dependent conf
1H- and 13C-NMR investigation of redox-state-dependent and temperature-dependent conformation changes in horse cytochrome c. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles 1H- and 13C-NMR investigation of redox-state-dependent and temperature-dependent conformation changes in horse cytochrome c. Eur J Biochem. 1993 Feb 1;211(3):555-62 Authors: Turner DL, Williams RJ The redox-state dependent changes in chemical shift, which have...
nmrlearner Journal club 0 08-21-2010 11:53 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 11:52 AM.


Map