NMR paper Particle-by-particle in situ characterization of the protein corona via real-time 3D single-particle tracking spectroscopy

		BioNMR > Educational resources > Journal club
[NMR paper] Particle-by-particle in situ characterization of the protein corona via real-time 3D single-particle tracking spectroscopy

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-22-2021, 02:46 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

Particle-by-particle in situ characterization of the protein corona via real-time 3D single-particle tracking spectroscopy

Particle-by-particle in situ characterization of the protein corona via real-time 3D single-particle tracking spectroscopy

Angewandte Chemie International Edition, Accepted Article.

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Single-particle Cryo-EM Principles & Uses - News-Medical.net Single-particle Cryo-EM Principles & Uses News-Medical.netSingle-particle cryo-EM is an analytical technique used to deduce the 3D structure of macromolecules (particularly proteins) as an alternative to X-Ray ... Single-particle Cryo-EM Principles & Uses - News-Medical.net More...	nmrlearner	Online News	0	05-02-2019 06:55 PM
Probing the cooperativity of Thermoplasma acidophilum proteasome core particle gating by NMR spectroscopy [Biophysics and Computational Biology] Probing the cooperativity of Thermoplasma acidophilum proteasome core particle gating by NMR spectroscopy Rui Huang, Felipe Perez, Lewis E. Kay... Date: 2017-11-14 The 20S proteasome core particle (20S CP) plays an integral role in cellular homeostasis by degrading proteins no longer required for function. The process is, in part, controlled via gating residues localized to the ends of the heptameric barrel-like CP structure that occlude substrate entry pores, preventing unregulated degradation of... Read More PNAS: Number: 46	nmrlearner	Journal club	0	11-15-2017 08:36 AM
[NMR paper] Probing the cooperativity of Thermoplasma acidophilum proteasome core particle gating by NMR spectroscopy. Probing the cooperativity of Thermoplasma acidophilum proteasome core particle gating by NMR spectroscopy. Probing the cooperativity of Thermoplasma acidophilum proteasome core particle gating by NMR spectroscopy. Proc Natl Acad Sci U S A. 2017 Oct 30;: Authors: Huang R, Pérez F, Kay LE Abstract The 20S proteasome core particle (20S CP) plays an integral role in cellular homeostasis by degrading proteins no longer required for function. The process is, in part, controlled via gating residues localized to the ends of the...	nmrlearner	Journal club	0	11-01-2017 07:49 PM
Journal Highlight: Lipoprotein particle concentration measured by nuclear magnetic resonance spectroscopy is associated with gestational age at delivery: a prospective cohort study Journal Highlight: Lipoprotein particle concentration measured by nuclear magnetic resonance spectroscopy is associated with gestational age at delivery: a prospective cohort study http://www.spectroscopynow.com/common/images/thumbnails/15ece10c38a.jpgThe complex relationship between maternal lipoproteins and preterm birth has been studied using NMR to measure lipoprotein particle levels in the blood of women at 24-29 weeks gestation. Read the rest at Spectroscopynow.com	nmrlearner	General	0	10-02-2017 01:35 PM
[NMR paper] HDL particle number measured on the Vantera®, the first clinical NMR analyzer. HDL particle number measured on the Vantera®, the first clinical NMR analyzer. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-elsevieroa.png http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles HDL particle number measured on the Vantera®, the first clinical NMR analyzer. Clin Biochem. 2015 Feb;48(3):148-55 Authors: Matyus SP, Braun PJ, Wolak-Dinsmore J, Saenger AK, Jeyarajah EJ, Shalaurova I, Warner SM,...	nmrlearner	Journal club	0	10-09-2015 04:49 PM
[NMR paper] NMR measurement of LDL particle number using the Vantera Clinical Analyzer. NMR measurement of LDL particle number using the Vantera Clinical Analyzer. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-elsevieroa.png Related Articles NMR measurement of LDL particle number using the Vantera Clinical Analyzer. Clin Biochem. 2014 Nov;47(16-17):203-10 Authors: Matyus SP, Braun PJ, Wolak-Dinsmore J, Jeyarajah EJ, Shalaurova I, Xu Y, Warner SM, Clement TS, Connelly MA, Fischer TJ Abstract BACKGROUND: The Vantera Clinical Analyzer was developed to enable...	nmrlearner	Journal club	0	07-16-2015 11:21 AM
[NMR tweet] @manuelafern1 Do you mean NMR? Nuclear magnetic resonance spectroscopy a test used to assay lipoprotein particle numbers & sizes @manuelafern1 Do you mean NMR? Nuclear magnetic resonance spectroscopy a test used to assay lipoprotein particle numbers & sizes Published by Drlipid (Thomas Dayspring) on 2013-04-08T23:42:33Z Source: Twitter	nmrlearner	Twitter NMR	0	04-08-2013 11:43 PM
[NMR paper] Remodeling of HDL by phospholipid transfer protein: demonstration of particle fusion Remodeling of HDL by phospholipid transfer protein: demonstration of particle fusion by 1H NMR spectroscopy. Related Articles Remodeling of HDL by phospholipid transfer protein: demonstration of particle fusion by 1H NMR spectroscopy. Biochem Biophys Res Commun. 1998 Aug 28;249(3):910-6 Authors: Korhonen A, Jauhiainen M, Ehnholm C, Kovanen PT, Ala-Korpela M There is evidence that phospholipid transfer protein (PLTP) can increase reverse cholesterol transport by inducing favorable subclass distribution in the high density lipoprotein (HDL)...	nmrlearner	Journal club	0	11-17-2010 11:15 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off