BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 08-22-2010, 03:03 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default A novel potassium channel blocking toxin from the scorpion Pandinus imperator: A 1H N

A novel potassium channel blocking toxin from the scorpion Pandinus imperator: A 1H NMR analysis using a nano-NMR probe.

Related Articles A novel potassium channel blocking toxin from the scorpion Pandinus imperator: A 1H NMR analysis using a nano-NMR probe.

Biochemistry. 1997 Mar 4;36(9):2649-58

Authors: Delepierre M, Prochnicka-Chalufour A, Possani LD

The three-dimensional solution structure of a novel peptide, Pi 1, purified from the venom of the scorpion Pandinus imperator and specific for potassium channels was determined by homonuclear proton NMR methods at 500 MHz from nanomole amounts of compound. P. imperator toxin is a voltage-dependent potassium channel specific peptide capable of blocking the shaker B K+ channels expressed in Sf9 cells in culture (Spodoptera frugiperda cell line no. 9) and displacing labeled noxiustoxin from rat brain synaptosomal membranes. The toxin has only 35 amino acid residues but is stabilized by four disulfide bridges (Cys4-Cys25, Cys10-Cys30, Cys14-Cys32, and Cys20-Cys35) instead of three commonly found in small potassium channel toxins. A detailed nuclear magnetic resonance structure of this protein was obtained using a nano-NMR probe and a combination of two-dimensional proton NMR experiments. The dihedral angles and distance restraints obtained from measured NMR parameters were used in structural calculations in order to determine the solution conformation of the toxin. The structure is organized around a short alpha-helix spanning residues Ser8-Thr18 and a beta-sheet. These two elements of secondary structure are stabilized by two disulfide bridges, Cys10-Cys30 and Cys14-Cys32. The antiparallel beta-sheet is composed of two strands extending from Asn22 to Cys32 with a tight turn at Arg28-Met29 in contact with the N-terminal fragment Leu1-Cys4. Comparison between the 3D structure of Pi 1 and those of other structurally and functionally related scorpion toxins is presented.

PMID: 9054572 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] New carbohydrate specificity and HIV-1 fusion blocking activity of the cyanobacterial
New carbohydrate specificity and HIV-1 fusion blocking activity of the cyanobacterial protein MVL: NMR, ITC and sedimentation equilibrium studies. Related Articles New carbohydrate specificity and HIV-1 fusion blocking activity of the cyanobacterial protein MVL: NMR, ITC and sedimentation equilibrium studies. J Mol Biol. 2004 Jun 11;339(4):901-14 Authors: Bewley CA, Cai M, Ray S, Ghirlando R, Yamaguchi M, Muramoto K Carbohydrate-binding proteins that bind their carbohydrate ligands with high affinity are rare and therefore of interest because...
nmrlearner Journal club 0 11-24-2010 09:51 PM
[NMR paper] NMR detection of slow conformational dynamics in an endonuclease toxin.
NMR detection of slow conformational dynamics in an endonuclease toxin. Related Articles NMR detection of slow conformational dynamics in an endonuclease toxin. J Biomol NMR. 1998 Jul;12(1):145-59 Authors: Whittaker SB, Boetzel R, MacDonald C, Lian LY, Pommer AJ, Reilly A, James R, Kleanthous C, Moore GR The cytotoxic activity of the secreted bacterial toxin colicin E9 is due to a non-specific DNase housed in the C-terminus of the protein. Double-resonance and triple-resonance NMR studies of the 134-amino acid 15N- and 13C/15N-labelled DNase...
nmrlearner Journal club 0 11-17-2010 11:15 PM
[NMR thesis] NMR study of fluoride ion diffusion in potassium-doped ?-PbF_2
NMR study of fluoride ion diffusion in potassium-doped ?-PbF_2 Cannon, David M. (1978) NMR study of fluoride ion diffusion in potassium-doped ?-PbF_2. Master's thesis, California Institute of Technology. http://resolver.caltech.edu/CaltechTHESIS:03292010-111321744 More...
nmrlearner NMR theses 0 08-27-2010 01:45 AM
[NMR paper] A novel potassium channel blocking toxin from the scorpion Pandinus imperator: A 1H N
A novel potassium channel blocking toxin from the scorpion Pandinus imperator: A 1H NMR analysis using a nano-NMR probe. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles A novel potassium channel blocking toxin from the scorpion Pandinus imperator: A 1H NMR analysis using a nano-NMR probe. Biochemistry. 1997 Mar 4;36(9):2649-58 Authors: Delepierre M, Prochnicka-Chalufour A, Possani LD The three-dimensional solution structure of a novel peptide, Pi 1, purified from the venom of the...
nmrlearner Journal club 0 08-22-2010 03:31 PM
[NMR paper] NMR structure of inactivation gates from mammalian voltage-dependent potassium channe
NMR structure of inactivation gates from mammalian voltage-dependent potassium channels. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.nature.com-images-lo_nature.gif Related Articles NMR structure of inactivation gates from mammalian voltage-dependent potassium channels. Nature. 1997 Jan 16;385(6613):272-5 Authors: Antz C, Geyer M, Fakler B, Schott MK, Guy HR, Frank R, Ruppersberg JP, Kalbitzer HR The electrical signalling properties of neurons originate largely from the gating properties of their ion channels. N-type...
nmrlearner Journal club 0 08-22-2010 03:31 PM
[NMR paper] NMR structure of inactivation gates from mammalian voltage-dependent potassium channe
NMR structure of inactivation gates from mammalian voltage-dependent potassium channels. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.nature.com-images-lo_nature.gif Related Articles NMR structure of inactivation gates from mammalian voltage-dependent potassium channels. Nature. 1997 Jan 16;385(6613):272-5 Authors: Antz C, Geyer M, Fakler B, Schott MK, Guy HR, Frank R, Ruppersberg JP, Kalbitzer HR The electrical signalling properties of neurons originate largely from the gating properties of their ion channels. N-type...
nmrlearner Journal club 0 08-22-2010 03:03 PM
[NMR paper] Three-dimensional structure of the RGD-containing snake toxin albolabrin in solution,
Three-dimensional structure of the RGD-containing snake toxin albolabrin in solution, based on 1H NMR spectroscopy and simulated annealing calculations. Related Articles Three-dimensional structure of the RGD-containing snake toxin albolabrin in solution, based on 1H NMR spectroscopy and simulated annealing calculations. Int J Pept Protein Res. 1996 Sep;48(3):220-8 Authors: Smith KJ, Jaseja M, Lu X, Williams JA, Hyde EI, Trayer IP Albolabrin is a snake toxin that contains a RGD-(Arg-Gly-Asp) sequence motif and competes with fibrinogen to bind...
nmrlearner Journal club 0 08-22-2010 02:20 PM
[NMR paper] NMR sequential assignments and solution structure of chlorotoxin, a small scorpion to
NMR sequential assignments and solution structure of chlorotoxin, a small scorpion toxin that blocks chloride channels. Related Articles NMR sequential assignments and solution structure of chlorotoxin, a small scorpion toxin that blocks chloride channels. Biochemistry. 1995 Jan 10;34(1):13-21 Authors: Lippens G, Najib J, Wodak SJ, Tartar A The solution structure of chlorotoxin, a small toxin purified from the venom of the Leiurus quinquestriatus scorpion, has been determined using 2D 1H NMR spectroscopy. Analysis of the NMR data shows that...
nmrlearner Journal club 0 08-22-2010 03:41 AM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 04:51 PM.


Map