NMR study of mutations of glycine-52 of the catalytic domain of diphtheria toxin.
J Pharm Biomed Anal. 2017 Dec 02;150:72-79
Authors: Sauvé S, Gingras G, Aubin Y
Abstract
Cross-reacting-material 197 (CRM197) is a naturally occurring non-toxic mutant of diphtheria toxin (DT) that is one of the few carrier protein used in the manufacture of polysaccharide vaccines targeting bacterial pathogens such as Neisseria meningitidis, Streptococcus pneumaniae and Haemophilus influenzae. A detailed explanation in structural terms for the lack of toxicity has started to emerge with the report of the X-ray structure of CRM197. Here, we present an NMR spectroscopy study of the wild-type catalytic domain of diphtheria toxin and the effects of mutations at residue 52 on its conformation. We utilized a strategy that consisted of gradually inducing steric perturbations by increasing the side chain size of the residue. Results show that the catalytic domain does not tolerate even the smallest perturbation, such as a glycine to alanine substitution, resulting in the destabilization of domain fold leading to protein aggregation. The observed behavior is further exacerbated with the substitution of amino acids with larger side chains. These findings support the concept that the lack of toxicity observed for CRM197 is the result of a highly unstable conformation of its catalytic domain that, upon insertion into the cell, cannot properly refold and perform its catalytic activity responsible for the arrest of all cellular protein synthesis.
PMID: 29216588 [PubMed - as supplied by publisher]
[NMR paper] Effect of amino acid mutations on the conformational dynamics of amyloidogenic immunoglobulin light-chains: A combined NMR and in silico study.
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Sci Rep. 2017 Sep 04;7(1):10339
Authors: Mukherjee S, Pondaven SP, Hand K, Madine J, Jaroniec CP
Abstract
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Study shows how mutations disrupt ALS-linked protein - Science Codex
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Study shows how mutations disrupt ALS-linked protein
Science Codex
Using nuclear magnetic resonance, computer simulations and microscopy, Fawzi, Brown graduate student Alexander Conicella and colleagues at Lehigh University were able to show that under normal circumstances, TDP-43 molecules concentrate into little ...
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08-19-2016 05:49 PM
[NMR paper] NMR Structure and Dynamics of the Resuscitation Promoting Factor RpfC Catalytic Domain.
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PLoS One. 2015;10(11):e0142807
Authors: Maione V, Ruggiero A, Russo L, De Simone A, Pedone PV, Malgieri G, Berisio R, Isernia C
Abstract
Mycobacterium tuberculosis latent infection is maintained for years with no clinical symptoms and no adverse effects for the host. The mechanism through which dormant M. tuberculosis resuscitates and...
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11-19-2015 04:08 AM
[NMR paper] Solution NMR studies reveal no global flexibility in the catalytic domain of CDC25B.
Solution NMR studies reveal no global flexibility in the catalytic domain of CDC25B.
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Proteins. 2014 Apr 17;
Authors: Lund G, Cierpicki T
Abstract
The CDC25B phosphatase is a critical regulator of the cell cycle and has been validated as an important therapeutic target in cancer. Previous studies using molecular dynamics simulations have concluded that the catalytic domain of CDC25B may experience a significant degree of dynamics...
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04-18-2014 01:35 PM
[NMR paper] Nmr structural studies of the first catalytic half-domain of ubiquitin activating enzyme.
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J Struct Biol. 2013 Nov 6;
Authors: Jaremko M, Jaremko L, Nowakowski M, Wojciechowski M, Szczepanowski RH, Panecka R, Zhukov I, Bochtler M, Ejchart A
Abstract
We report a high resolution NMR structure and (15)N relaxation studies of the first catalytic cysteine half-domain (FCCH) of the mouse ubiquitin-activating enzyme E1, together with...
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11-12-2013 03:52 PM
[NMR paper] NMR backbone assignment of a protein kinase catalytic domain by a combination of seve
NMR backbone assignment of a protein kinase catalytic domain by a combination of several approaches: application to the catalytic subunit of cAMP-dependent protein kinase.
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Chembiochem. 2004 Nov 5;5(11):1508-16
Authors: Langer T, Vogtherr M, Elshorst B, Betz M, Schieborr U, Saxena K, Schwalbe H
Protein phosphorylation is one of the most important mechanisms...
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11-24-2010 10:03 PM
[NMR paper] Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-
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Protein Eng. 2001 Oct;14(10):717-21
Authors: Bujnicki JM, Rotkiewicz P, Kolinski A, Rychlewski L
Using a recent version of the SICHO algorithm for in silico protein folding, we made a blind prediction of the tertiary...
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11-19-2010 08:44 PM
[NMR paper] Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spec
Catalytic activity of the SH2 domain of human pp60c-src; evidence from NMR, mass spectrometry, site-directed mutagenesis and kinetic studies for an inherent phosphatase activity.
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Biochemistry. 1995 Nov 21;34(46):15351-8
Authors: Boerner RJ, Consler TG, Gampe RT, Weigl D, Willard DH, Davis DG, Edison AM, Loganzo F, Kassel DB, Xu RX
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