BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 12-25-2016, 09:18 AM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,733
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default NMR Studies of the Structure and Function of the HIV-1 5'-Leader.

NMR Studies of the Structure and Function of the HIV-1 5'-Leader.

Related Articles NMR Studies of the Structure and Function of the HIV-1 5'-Leader.

Viruses. 2016 Dec 21;8(12):

Authors: Keane SC, Summers MF

Abstract
The 5'-leader of the human immunodeficiency virus type 1 (HIV-1) genome plays several critical roles during viral replication, including differentially establishing mRNA versus genomic RNA (gRNA) fates. As observed for proteins, the function of the RNA is tightly regulated by its structure, and a common paradigm has been that genome function is temporally modulated by structural changes in the 5'-leader. Over the past 30 years, combinations of nucleotide reactivity mapping experiments with biochemistry, mutagenesis, and phylogenetic studies have provided clues regarding the secondary structures of stretches of residues within the leader that adopt functionally discrete domains. More recently, nuclear magnetic resonance (NMR) spectroscopy approaches have been developed that enable direct detection of intra- and inter-molecular interactions within the intact leader, providing detailed insights into the structural determinants and mechanisms that regulate HIV-1 genome packaging and function.


PMID: 28009832 [PubMed - in process]



More...
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR paper] Complete backbone and DENQ side chain NMR assignments in proteins from a single experiment: implications to structure-function studies.
Complete backbone and DENQ side chain NMR assignments in proteins from a single experiment: implications to structure-function studies. Related Articles Complete backbone and DENQ side chain NMR assignments in proteins from a single experiment: implications to structure-function studies. J Struct Funct Genomics. 2014 Feb 18; Authors: Reddy JG, Hosur RV Abstract Resonance assignment is the first and the most crucial step in all nuclear magnetic resonance (NMR) investigations on structure-function relationships in biological...
nmrlearner Journal club 0 02-19-2014 03:12 PM
Postdoctoral position in structure-function studies of G-protein networks in ... - Scientific American
Postdoctoral position in structure-function studies of G-protein networks in ... - Scientific American <img alt="" height="1" width="1" /> Postdoctoral position in structure-function studies of G-protein networks in ... Scientific American Our multidisciplinary team of about 80 researchers is housed in new laboratory facilities and combines extensive expertise in structural biology (X-ray crystallography, SAXS, NMR, EM and atomic force microscopy), biophysics, enzymology and molecular ... Read here
nmrlearner Online News 0 02-03-2014 03:18 AM
[NMR paper] Insights into hERG K+ channel structure and function from NMR studies.
Insights into hERG K+ channel structure and function from NMR studies. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--production.springer.de-OnlineResources-Logos-springerlink.gif Related Articles Insights into hERG K+ channel structure and function from NMR studies. Eur Biophys J. 2013 Jan;42(1):71-9 Authors: Ng CA, Torres AM, Pagès G, Kuchel PW, Vandenberg JI Abstract The unique gating kinetics of hERG K(+) channels are critical for normal cardiac repolarization, and patients with mutations in hERG have a...
nmrlearner Journal club 0 06-15-2013 09:13 PM
Preparation of protein samples for NMR structure, function, and small-molecule screening studies.
Preparation of protein samples for NMR structure, function, and small-molecule screening studies. Preparation of protein samples for NMR structure, function, and small-molecule screening studies. Methods Enzymol. 2011;493:21-60 Authors: Acton TB, Xiao R, Anderson S, Aramini J, Buchwald WA, Ciccosanti C, Conover K, Everett J, Hamilton K, Huang YJ, Janjua H, Kornhaber G, Lau J, Lee DY, Liu G, Maglaqui M, Ma L, Mao L, Patel D, Rossi P, Sahdev S, Shastry R, Swapna GV, Tang Y, Tong S, Wang D, Wang H, Zhao L, Montelione GT In this chapter, we...
nmrlearner Journal club 0 03-05-2011 01:02 PM
[NMR paper] Using NMR as a probe of protein structure and function.
Using NMR as a probe of protein structure and function. Related Articles Using NMR as a probe of protein structure and function. Biochem Soc Trans. 1999 Aug;27(4):701-13 Authors: Malthouse JP
nmrlearner Journal club 0 11-18-2010 08:31 PM
[NMR paper] NMR studies on the structure/function correlations of T-cell-epitope analogs from per
NMR studies on the structure/function correlations of T-cell-epitope analogs from pertussis toxin. Related Articles NMR studies on the structure/function correlations of T-cell-epitope analogs from pertussis toxin. Eur J Biochem. 1998 Jun 1;254(2):313-7 Authors: Scarselli M, Esposito G, De Magistris MT, Domenighini M, Rappuoli R, Burroni G, Bernini A, Niccolai N A synthetic tridecapeptide, corresponding to the 30-42 fragment of the S1 subunit of pertussis toxin, has been structurally characterised by using NMR spectroscopy. The molecule...
nmrlearner Journal club 0 11-17-2010 11:06 PM
NMR STUDIES OF STRUCTURE AND FUNCTION OF BIOLOGICAL MACROMOLECULES - Kurt Wüthrich
NMR STUDIES OF STRUCTURE AND FUNCTION OF BIOLOGICAL MACROMOLECULES - A Lecture by Kurt Wüthrich for The Nobel Foundation, 2002 http://nobelprize.org/nobel_prizes/chemistry/laureates/2002/wutrich-lecture.pdf A video of the lecture can be found here: http://nobelprize.org/nobel_prizes/chemistry/laureates/2002/wuthrich-lecture.html
timbo Educational web pages 0 08-29-2008 02:28 AM
Finding protein function from its NMR structure
For proteomics folks who gamble with their careers by promising discovery of protein function from NMR structures that may not look like any known proteins. Find the best structural matches in a protein database DALI CE DEJAVU Align structure of your protein with several proteins of your interest MASS MaltiProt
nmrlearner Structural analysis 1 09-19-2006 12:11 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 01:58 PM.


Map