NMR Studies of the Q5A, G6S Unmyristylated Feline Immunodeficiency Virus Matrix Protein

		BioNMR > Educational resources > Journal club
NMR Studies of the Q5A, G6S Unmyristylated Feline Immunodeficiency Virus Matrix Protein

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

01-29-2014, 12:50 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR Studies of the Q5A, G6S Unmyristylated Feline Immunodeficiency Virus Matrix Protein

NMR Studies of the Q5A, G6S Unmyristylated Feline Immunodeficiency Virus Matrix Protein

Publication date: 28 January 2014
Source:Biophysical Journal, Volume 106, Issue 2, Supplement 1

Author(s): Vaughn R. Spurrier , Lola Brown , Michael Summers

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solid-State Nuclear MagneticResonance (NMR) Spectroscopyof Human Immunodeficiency Virus gp41 Protein That Includes the FusionPeptide: NMR Detection of Recombinant Fgp41 in Inclusion Bodies inWhole Bacterial Cells and Structural Characterization of Pu Solid-State Nuclear MagneticResonance (NMR) Spectroscopyof Human Immunodeficiency Virus gp41 Protein That Includes the FusionPeptide: NMR Detection of Recombinant Fgp41 in Inclusion Bodies inWhole Bacterial Cells and Structural Characterization of Purifiedand Membrane-Associated Fgp41 http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi201292e/aop/images/medium/bi-2011-01292e_0009.gif Biochemistry DOI: 10.1021/bi201292e http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/omcuPF0ineE ...	nmrlearner	Journal club	0	11-01-2011 01:52 AM
NMR, biophysical and biochemical studies reveal the minimal calmodulin-binding domain of the HIV-1 matrix protein. NMR, biophysical and biochemical studies reveal the minimal calmodulin-binding domain of the HIV-1 matrix protein. NMR, biophysical and biochemical studies reveal the minimal calmodulin-binding domain of the HIV-1 matrix protein. J Biol Chem. 2011 Jul 28; Authors: Samal AB, Ghanam RH, Fernandez TF, Monroe EB, Saad JS Subcellular distribution of Calmodulin (CaM) in human immunodeficiency virus type-1 (HIV-1) infected cells is distinct from that observed in uninfected cells. CaM has been shown to interact and co-localize with the HIV-1 Gag protein...	nmrlearner	Journal club	0	07-30-2011 11:23 AM
Expression and purification of myristoylated matrix protein of Mason-Pfizer monkey virus for NMR and MS measurements. Expression and purification of myristoylated matrix protein of Mason-Pfizer monkey virus for NMR and MS measurements. Expression and purification of myristoylated matrix protein of Mason-Pfizer monkey virus for NMR and MS measurements. Protein Expr Purif. 2011 May 24; Authors: Prchal J, Junkova P, Strmiskova M, Lipov J, Hynek R, Ruml T, Hrabal R Matrix proteins play multiple roles both in early and late stages of the viral replication cycle. Their N-terminal myristoylation is important for interaction with the host cell membrane during virus...	nmrlearner	Journal club	0	06-07-2011 11:05 AM
[NMR paper] Correlation between drug release kinetics from proteineous matrix and matrix structur Correlation between drug release kinetics from proteineous matrix and matrix structure: EPR and NMR study. Related Articles Correlation between drug release kinetics from proteineous matrix and matrix structure: EPR and NMR study. J Pharm Sci. 2000 Mar;89(3):365-81 Authors: Katzhendler I, Mäder K, Friedman M The present study was conducted in order to probe the microstructure, microviscosity, and hydration properties of matrices containing two model drugs, naproxen sodium (NS) and naproxen (N), and egg albumin (EA) as matrix carrier. The...	nmrlearner	Journal club	0	11-18-2010 09:15 PM
[NMR paper] Solution structures of human immunodeficiency virus type 1 (HIV-1) and moloney murine Solution structures of human immunodeficiency virus type 1 (HIV-1) and moloney murine leukemia virus (MoMLV) capsid protein major-homology-region peptide analogs by NMR spectroscopy. Related Articles Solution structures of human immunodeficiency virus type 1 (HIV-1) and moloney murine leukemia virus (MoMLV) capsid protein major-homology-region peptide analogs by NMR spectroscopy. Eur J Biochem. 1998 Oct 1;257(1):69-77 Authors: Clish CB, Peyton DH, Barklis E The capsid domain of retroviral Gag proteins possesses a single highly conserved...	nmrlearner	Journal club	0	11-17-2010 11:15 PM
[NMR paper] Comparison of the solution conformations of a human immunodeficiency virus peptidomim Comparison of the solution conformations of a human immunodeficiency virus peptidomimetic and its retro-inverso isomer using 1H NMR spectroscopy. Related Articles Comparison of the solution conformations of a human immunodeficiency virus peptidomimetic and its retro-inverso isomer using 1H NMR spectroscopy. J Pept Res. 1997 Dec;50(6):421-35 Authors: Higgins KA, Bicknell W, Keah HH, Hearn MT The solution conformations of the all L-alpha-peptide 1 and the corresponding retro-all D-alpha-peptide 2, two 20-metric peptides which generate antibodies...	nmrlearner	Journal club	0	08-22-2010 05:08 PM
[NMR paper] NMR solution structure of the RNA-binding peptide from human immunodeficiency virus ( NMR solution structure of the RNA-binding peptide from human immunodeficiency virus (type 1) Rev. Related Articles NMR solution structure of the RNA-binding peptide from human immunodeficiency virus (type 1) Rev. Biochemistry. 1995 Jul 4;34(26):8242-9 Authors: Scanlon MJ, Fairlie DP, Craik DJ, Englebretsen DR, West ML NMR spectroscopy has been used to solve the three-dimensional solution structure of a minimal RNA-binding domain of the Rev protein from the human immunodeficiency virus (type 1), an essential regulatory protein for viral...	nmrlearner	Journal club	0	08-22-2010 03:50 AM
NMR structure and ion channel activity of the p7 protein from hepatitis C virus. NMR structure and ion channel activity of the p7 protein from hepatitis C virus. Related Articles NMR structure and ion channel activity of the p7 protein from hepatitis C virus. J Biol Chem. 2010 Jul 28; Authors: Montserret R, Saint N, Vanbelle C, Salvay AG, Simorre JP, Ebel C, Sapay N, Renisio JG, Bockmann A, Steinmann E, Pietschmann T, Dubuisson J, Chipot C, Penin F The small membrane protein p7 of hepatitis C virus forms oligomers and exhibits ion channel activity essential for virus infectivity. These viroporin features render p7 an...	nmrlearner	Journal club	0	08-17-2010 03:36 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off