Related ArticlesNMR studies of the metal-loading kinetics and acid-base chemistry of DOTA and butylamide-DOTA.
Bioconjug Chem. 1999 May-Jun;10(3):454-63
Authors: Keire DA, Kobayashi M
The conjugation of a chelating agent to a protein via a covalent linkage has been previously reported to change the metal-binding characteristics of the chelator. A fundamental understanding of these binding changes would enable design of a new generation of metal-chelating agents for biological applications. To assess the effect of conjugation on the commonly used chelating agent 1 4,7, 10-tetraaazacyclododecane-N,N',N'',N'''-tetraaacetic acid (DOTA), we synthesized a model protein conjugate, 1,4, 7-tris(carboxymethyl)-10-(butylaminocarboxymethyl)-1,4,7, 10-tetraaazacyclododecane (BD) and explored the metal-binding characteristics via NMR. The extent of ionization of the carboxylic acid groups and the two protonated macrocycle nitrogens of DOTA and BD were determined as a function of pH by chemical shift changes in proximal carbon-bonded protons. In addition to the expected sensitivity of the chemical shifts to titration of proximate acidic groups, BD resonances from carbon-bonded protons 10-17 bonds distant from the deprotonation site also shifted significantly, indicating the presence of conformational changes. Furthermore, increased shielding of the amide and alkyl proton signals upon deprotonation of the carboxylic acid groups indicates the presence of pH-dependent hydrogen-bonded BD isoforms. On the basis of these NMR data, we propose new structures for the doubly protonated forms of DOTA and BD. To measure metal loading, the yttrium-loading rates (type I to type II) of DOTA and BD were determined by following the intensity of type I and type II proton signals as a function of time. The yttrium-loading rates of BD are approximately one-half those of DOTA at pHs between 4.6 and 6.5 and 37 degrees C. The loading rates measured as a function of pH indicate that while both the doubly protonated and singly protonated forms of DOTA are reactive to metal loading, only the singly protonated form of BD is reactive.
[NMR paper] 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of
13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein.
Related Articles 13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein.
J Mol Biol. 2005 Jun 17;349(4):699-715
Authors: Shajani Z, Varani G
The widespread importance of induced fit and order-disorder transition in RNA recognition by proteins and small molecules makes it imperative that RNA motional properties are...
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[NMR paper] NMR studies on Cu(II)-peptide complexes: exchange kinetics and determination of struc
NMR studies on Cu(II)-peptide complexes: exchange kinetics and determination of structures in solution.
Related Articles NMR studies on Cu(II)-peptide complexes: exchange kinetics and determination of structures in solution.
Mol Biosyst. 2005 May;1(1):79-84
Authors: Gaggelli E, Kozlowski H, Valensin D, Valensin G
The interaction of copper(II) with histidine containing peptides has recently acquired renewed interest following the established link between abnormal protein behaviour in neurodegenerative processes and unpaired copper homeostasis....
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[NMR paper] Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin
Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN' by NMR.
Related Articles Tautomerism, acid-base equilibria, and H-bonding of the six histidines in subtilisin BPN' by NMR.
Protein Sci. 2003 Apr;12(4):794-810
Authors: Day RM, Thalhauser CJ, Sudmeier JL, Vincent MP, Torchilin EV, Sanford DG, Bachovchin CW, Bachovchin WW
We have determined by (15)N, (1)H, and (13)C NMR, the chemical behavior of the six histidines in subtilisin BPN' and their PMSF and peptide boronic acid complexes in aqueous solution as a...
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[NMR paper] An NMR method for studying the kinetics of metal exchange in biomolecular systems.
An NMR method for studying the kinetics of metal exchange in biomolecular systems.
Related Articles An NMR method for studying the kinetics of metal exchange in biomolecular systems.
J Biomol NMR. 2002 Aug;23(4):303-9
Authors: Barbieri R, Hore PJ, Luchina C, Pierattelli R
The kinetics of lanthanide (III) exchange for calcium(II) in the C-terminal EF-hand of the protein calbindin D9k have been studied by one-dimensional (1D) stopped-flow NMR. By choosing a paramagnetic lanthanide (Ce3+), kinetics in the sub-second range can be easily measured....
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[NMR paper] Metal ion binding to calmodulin: NMR and fluorescence studies.
Metal ion binding to calmodulin: NMR and fluorescence studies.
Related Articles Metal ion binding to calmodulin: NMR and fluorescence studies.
Biometals. 1998 Sep;11(3):213-22
Authors: Ouyang H, Vogel HJ
Calmodulin is an important second messenger protein which is involved in a large variety of cellular pathways. Calmodulin is sensitive to fluctuations in the intracellular Ca2+ levels and is activated by the binding of four Ca2+ ions. In spite of the important role it plays in signal transduction pathways, it shows a surprisingly broad...
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[NMR paper] NMR spectroscopic studies of I = 1/2 metal ions in biological systems.
NMR spectroscopic studies of I = 1/2 metal ions in biological systems.
Related Articles NMR spectroscopic studies of I = 1/2 metal ions in biological systems.
Biochem Cell Biol. 1998;76(2-3):223-34
Authors: Oz G, Pountney DL, Armitage IM
This article reviews the use of nuclear magnetic resonance methods of spin 1/2 metal nuclei to probe the metal binding site(s) in a variety of metalloproteins. The majority of the studies have involved native Zn(II) and Ca(II) metalloproteins where there has been isostructural substitution of these metal ions...
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[NMR paper] The pKa of the general acid/base carboxyl group of a glycosidase cycles during cataly
The pKa of the general acid/base carboxyl group of a glycosidase cycles during catalysis: a 13C-NMR study of bacillus circulans xylanase.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--pubs.acs.org-images-acspubs.jpg Related Articles The pKa of the general acid/base carboxyl group of a glycosidase cycles during catalysis: a 13C-NMR study of bacillus circulans xylanase.
Biochemistry. 1996 Aug 6;35(31):9958-66
Authors: McIntosh LP, Hand G, Johnson PE, Joshi MD, Körner M, Plesniak LA, Ziser L, Wakarchuk WW, Withers SG
The 20 kDa...
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[NMR paper] Structure of the metal-free gamma-carboxyglutamic acid-rich membrane binding region o
Structure of the metal-free gamma-carboxyglutamic acid-rich membrane binding region of factor IX by two-dimensional NMR spectroscopy.
http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--highwire.stanford.edu-icons-externalservices-pubmed-standard-jbc_full_free.gif Related Articles Structure of the metal-free gamma-carboxyglutamic acid-rich membrane binding region of factor IX by two-dimensional NMR spectroscopy.
J Biol Chem. 1995 Apr 7;270(14):7980-7
Authors: Freedman SJ, Furie BC, Furie B, Baleja JD
The gamma-carboxyglutamic acid-rich...