NMR Studies of the Dynamics of High-Spin Nitrophorins: Comparative Studies of NP4 and NP2 at Close to Physiological pH.
Biochemistry. 2014 Dec 8;
Authors: Berry RE, Muthu D, Yang F, Walker FA
Abstract
The ?-barrel nitrophorin (NP) heme proteins are found in the saliva of the blood-sucking insect Rhodnius prolixus, which synthesizes and stores nitric oxide (NO) in the salivary glands. NO is bound to iron of the NPs and is released by dilution and pH rise when the insect spits its saliva into the tissues of a victim, to aid in obtaining a blood meal. In the adult insect there are four ni-trophorins, NP1 - NP4, which have sequence similarities in two pairs, NP1/NP4 (90% identical) and NP2/NP3 (80% identical). The NP4 crystal structures available have been used to propose that pH-dependent changes in conformation of two loops between adjacent ?-strands at the front opening of the protein, the A-B and G-H loops, determine the rate of NO release. At pH 7.3, NP4 releases NO 17 times faster than does NP2. In this work, the aqua complexes of NP4 and NP2 have been investigated by NMR relaxation measurements to probe the pico- to nanosecond and micro- to millisecond timescale motions at two pH values, 6.5 and 7.3. It is found that NP4-OH2 is fairly rigid and only residues in the loop regions show dynamics at pH 6.5, while at pH 7.3 much more dynamics of the loops and most of the ?-strands is observed, while the ?-helices remain fairly rigid. In comparison, NP2-OH2 shows much less dynamics, albeit somewhat more than the previously-reported NP2-NO complex (Muthu, D.; Berry, R. E.; Zhang, H.; Walker, F. A. (2013) Biochemistry 52, 7910-7925). The reasons for this major difference between NP4 and NP2 are discussed.
PMID: 25486224 [PubMed - as supplied by publisher]
[NMR paper] Solution and high-pressure NMR studies of the structure, dynamics and stability of the cross-reactive allergenic cod parvalbumin Gad m 1.
Solution and high-pressure NMR studies of the structure, dynamics and stability of the cross-reactive allergenic cod parvalbumin Gad m 1.
Related Articles Solution and high-pressure NMR studies of the structure, dynamics and stability of the cross-reactive allergenic cod parvalbumin Gad m 1.
Proteins. 2014 Aug 12;
Authors: Moraes AH, Ackerbauer D, Kostadinova M, Bublin M, de Oliveira GA, Ferreira F, Almeida FC, Breiteneder H, Valente AP
Abstract
Beta-parvalbumins from different fish species have been identified as the main...
nmrlearner
Journal club
0
08-15-2014 12:53 PM
[NMR paper] NMR Spectroscopic Studies of Intrinsically Disordered Proteins at Near-Physiological Conditions.
NMR Spectroscopic Studies of Intrinsically Disordered Proteins at Near-Physiological Conditions.
Related Articles NMR Spectroscopic Studies of Intrinsically Disordered Proteins at Near-Physiological Conditions.
Angew Chem Int Ed Engl. 2013 Sep 20;
Authors: Gil S, Hošek T, Solyom Z, Kümmerle R, Brutscher B, Pierattelli R, Felli IC
Abstract
When approaching physiological conditions, solvent exchange of amide protons in intrinsically disordered proteins (IDPs) is so pronounced that it becomes a key feature to be considered in NMR experiment...
nmrlearner
Journal club
0
10-12-2013 05:24 PM
Exceeding the limit of dynamics studies on biomolecules using high spin-lock field strengths with a cryogenically cooled probehead
Exceeding the limit of dynamics studies on biomolecules using high spin-lock field strengths with a cryogenically cooled probehead
Publication year: 2012
Source:Journal of Magnetic Resonance</br>
David Ban, Alvar D. Gossert, Karin Giller, Stefan Becker, Christian Griesinger, Donghan Lee</br>
Internal motions in the microsecond timescale have been proposed to play an active part in a protein’s biological function. Nuclear magnetic resonance (NMR) relaxation dispersion is a robust method sensitive to this timescale with atomic resolution. However, due to technical...
nmrlearner
Journal club
0
05-15-2012 06:40 PM
Comparative NMR studies demonstrate profound differences between two viroporins: P7 o
Comparative NMR studies demonstrate profound differences between two viroporins: P7 of HCV and Vpu of HIV-1.
Related Articles Comparative NMR studies demonstrate profound differences between two viroporins: P7 of HCV and Vpu of HIV-1.
Biochim Biophys Acta. 2010 Aug 18;
Authors: Cook GA, Zhang H, Park SH, Wang Y, Opella SJ
The p7 protein from hepatitis C virus and the Vpu protein from HIV-1 are members of the viroporin family of small viral membrane proteins. It is essential to determine their structures in order to obtain an understanding of their...
nmrlearner
Journal club
0
08-25-2010 02:04 PM
[NMR paper] Comparative studies of the interaction of human and bovine platelet factor 4 with hep
Comparative studies of the interaction of human and bovine platelet factor 4 with heparin using histidine NMR resonances as spectroscopic probes.
Related Articles Comparative studies of the interaction of human and bovine platelet factor 4 with heparin using histidine NMR resonances as spectroscopic probes.
J Protein Chem. 1993 Jun;12(3):303-9
Authors: Talpas CJ, Lee L
The pKa values of His-38 and His-50 of the heparin-binding protein, bovine platelet factor 4, are 5.6 and 6.5, respectively, as determined by 1H NMR spectroscopy. The 1H NMR...
nmrlearner
Journal club
0
08-21-2010 11:53 PM
[NMR paper] Interaction of calmodulin with phospholamban and caldesmon: comparative studies by 1H
Interaction of calmodulin with phospholamban and caldesmon: comparative studies by 1H-NMR spectroscopy.
Related Articles Interaction of calmodulin with phospholamban and caldesmon: comparative studies by 1H-NMR spectroscopy.
Biochim Biophys Acta. 1992 Nov 10;1160(1):22-34
Authors: Gao Y, Levine BA, Mornet D, Slatter DA, Strasburg GM
In order to identify comparative aspects of the interaction of calmodulin with its target proteins, proton magnetic-resonance studies of complex formation between calmodulin and defined segments of phospholamban...
nmrlearner
Journal club
0
08-21-2010 11:45 PM
[NMR paper] Comparative NMR studies on cardiac troponin C and a mutant incapable of binding calci
Comparative NMR studies on cardiac troponin C and a mutant incapable of binding calcium at site II.
Related Articles Comparative NMR studies on cardiac troponin C and a mutant incapable of binding calcium at site II.
Biochemistry. 1991 Oct 22;30(42):10236-45
Authors: Brito RM, Putkey JA, Strynadka NC, James MN, Rosevear PR
One- and two-dimensional NMR techniques were used to study both the influence of mutations on the structure of recombinant normal cardiac troponin C (cTnC3) and the conformational changes induced by Ca2+ binding to site II,...
nmrlearner
Journal club
0
08-21-2010 11:12 PM
[NMR paper] Comparative NMR studies on cardiac troponin C and a mutant incapable of binding calci
Comparative NMR studies on cardiac troponin C and a mutant incapable of binding calcium at site II.
Related Articles Comparative NMR studies on cardiac troponin C and a mutant incapable of binding calcium at site II.
Biochemistry. 1991 Oct 22;30(42):10236-45
Authors: Brito RM, Putkey JA, Strynadka NC, James MN, Rosevear PR
One- and two-dimensional NMR techniques were used to study both the influence of mutations on the structure of recombinant normal cardiac troponin C (cTnC3) and the conformational changes induced by Ca2+ binding to site II,...