NMR paper NMR structures of proteins and protein complexes beyond 20,000 M(r).

		BioNMR > Educational resources > Journal club
[NMR paper] NMR structures of proteins and protein complexes beyond 20,000 M(r).

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

08-22-2010, 05:08 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR structures of proteins and protein complexes beyond 20,000 M(r).

NMR structures of proteins and protein complexes beyond 20,000 M(r).

Related Articles NMR structures of proteins and protein complexes beyond 20,000 M(r).

Nat Struct Biol. 1997 Oct;4 Suppl:849-53

Authors: Clore GM, Gronenborn AM

Recent advances in multidimensional NMR to obtain resonance assignments, interproton distance and torsion angle restraints, and restraints that characterize long range order, coupled with new methods of structure refinement, have permitted solution structures of proteins in excess of 250 residues to be solved.

PMID: 9377157 [PubMed - indexed for MEDLINE]

Source: PubMed

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] Structures of protein-protein complexes are docked using only NMR restraints from res Structures of protein-protein complexes are docked using only NMR restraints from residual dipolar coupling and chemical shift perturbations. Related Articles Structures of protein-protein complexes are docked using only NMR restraints from residual dipolar coupling and chemical shift perturbations. J Am Chem Soc. 2002 Mar 13;124(10):2104-5 Authors: McCoy MA, Wyss DF NMR structures of protein-protein and protein-ligand complexes rely heavily on intermolecular NOEs. Recent work has shown that if no significant conformational changes occur upon...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMR paper] NMR structure determination of proteins and protein complexes larger than 20 kDa. NMR structure determination of proteins and protein complexes larger than 20 kDa. Related Articles NMR structure determination of proteins and protein complexes larger than 20 kDa. Curr Opin Chem Biol. 1998 Oct;2(5):564-70 Authors: Clore GM, Gronenborn AM Recent advances in multidimensional nuclear magnetic resonance methodology to obtain 1H, 15N and 13C resonance assignments, interproton distance and torsion angle restraints, and restraints that characterize long-range order, coupled with new methods of structure refinement and novel methods...	nmrlearner	Journal club	0	11-17-2010 11:15 PM
[NMR paper] Determining the structures of large proteins and protein complexes by NMR. Determining the structures of large proteins and protein complexes by NMR. Related Articles Determining the structures of large proteins and protein complexes by NMR. Trends Biotechnol. 1998 Jan;16(1):22-34 Authors: Clore GM, Gronenborn AM Recent advances in multidimensional NMR methodology to obtain 1H, 15N and 13C resonance assignments, interproton-distance and torsion-angle restraints, and restraints that characterize long-range order have, coupled with new methods of structure refinement, permitted solution structure of proteins in excess...	nmrlearner	Journal club	0	11-17-2010 11:06 PM
[NMR paper] Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and p Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and protein-DNA complexes by multidimensional heteronuclear NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and protein-DNA complexes by multidimensional heteronuclear NMR. ...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] Structures of larger proteins, protein-ligand and protein-DNA complexes by multi-dime Structures of larger proteins, protein-ligand and protein-DNA complexes by multi-dimensional heteronuclear NMR. Related Articles Structures of larger proteins, protein-ligand and protein-DNA complexes by multi-dimensional heteronuclear NMR. Prog Biophys Mol Biol. 1994;62(2):153-84 Authors: Clore GM, Gronenborn AM	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and p Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and protein-DNA complexes by multidimensional heteronuclear NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Young Investigator Award Lecture. Structures of larger proteins, protein-ligand and protein-DNA complexes by multidimensional heteronuclear NMR. ...	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] Structures of larger proteins, protein-ligand and protein-DNA complexes by multi-dime Structures of larger proteins, protein-ligand and protein-DNA complexes by multi-dimensional heteronuclear NMR. Related Articles Structures of larger proteins, protein-ligand and protein-DNA complexes by multi-dimensional heteronuclear NMR. Prog Biophys Mol Biol. 1994;62(2):153-84 Authors: Clore GM, Gronenborn AM	nmrlearner	Journal club	0	08-22-2010 03:33 AM
[NMR paper] NMR studies of protein-nucleic acid complexes: structures, solvation, dynamics and co NMR studies of protein-nucleic acid complexes: structures, solvation, dynamics and coupled protein folding. Related Articles NMR studies of protein-nucleic acid complexes: structures, solvation, dynamics and coupled protein folding. Q Rev Biophys. 1999 Feb;32(1):57-98 Authors: Härd T	nmrlearner	Journal club	0	08-21-2010 04:03 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off