NMR paper NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana.

		BioNMR > Educational resources > Journal club
[NMR paper] NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-15-2013, 03:12 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana.

Related Articles NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana.

J Biomol NMR. 2012 Dec;54(4):415-20

Authors: Wang S, Huang W, Yang D

PMID: 23129012 [PubMed - indexed for MEDLINE]

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana NMR structure note: repetitive domain of aciniform spidroin 1 from Nephila antipodiana Content Type Journal Article Category NMR structure note Pages 1-6 DOI 10.1007/s10858-012-9679-5 Authors	nmrlearner	Journal club	0	11-10-2012 01:53 AM
NMR structure note: solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger NMR structure note: solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger NMR structure note: solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger Content Type Journal Article Category NMR structure note Pages 1-7 DOI 10.1007/s10858-012-9654-1 Authors	nmrlearner	Journal club	0	07-20-2012 11:13 PM
Erratum to: NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Erratum to: NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Erratum to: NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Content Type Journal Article Pages 1-1 DOI 10.1007/s10858-011-9476-6 Authors	nmrlearner	Journal club	0	02-23-2011 11:21 PM
Erratum to: NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Erratum to: NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Erratum to: NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Content Type Journal Article Pages 1-1 DOI 10.1007/s10858-011-9476-6 Authors	nmrlearner	Journal club	0	02-23-2011 11:18 PM
NMR assignments of the N-terminal domain of Nephila clavipes spidroin 1. NMR assignments of the N-terminal domain of Nephila clavipes spidroin 1. NMR assignments of the N-terminal domain of Nephila clavipes spidroin 1. Biomol NMR Assign. 2010 Dec 10; Authors: Parnham S, Gaines WA, Duggan BM, Marcotte WR, Hennig M The building blocks of spider dragline silk are two fibrous proteins secreted from the major ampullate gland named spidroins 1 and 2 (MaSp1, MaSp2). These proteins consist of a large central domain composed of approximately 100 tandem copies of a 35-40 amino acid repeat sequence. Non-repetitive N and...	nmrlearner	Journal club	0	12-15-2010 12:03 PM
NMR structure note: solution structure of the core domain of MESD that is essential f NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--production.springer.de-OnlineResources-Logos-springerlink.gif Related Articles NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6. J Biomol NMR. 2010 Aug;47(4):283-8 Authors: Chen J, Li Q, Liu CC, Zhou B, Bu G, Wang J	nmrlearner	Journal club	0	09-24-2010 03:50 AM
NMR structure note: solution structure of the core domain of MESD that is essential f NMR structure note: solution structure of the core domain of MESD that is essential for proper folding of LRP5/6 Content Type Journal Article DOI 10.1007/s10858-010-9426-8 Authors Jianglei Chen, Wayne State University Department of Biochemistry and Molecular Biology, School of Medicine Detroit MI 48201 USA Qianqian Li, Wayne State University Department of Biochemistry and Molecular Biology, School of Medicine Detroit MI 48201 USA Chia-Chen Liu, Washington University Departments of Pediatrics, and Cell Biology and Physiology, School of Medicine St. Louis MO 63110 USA	nmrlearner	Journal club	0	08-14-2010 04:19 AM
NMR structure note: UBA domain of CIP75 NMR structure note: UBA domain of CIP75 Content Type Journal Article DOI 10.1007/s10858-010-9397-9 Authors Fabien Kieken, University of Nebraska Medical Center Department of Biochemistry and Molecular Biology and Eppley Cancer Center Omaha NE 68198 USA Gaëlle Spagnol, University of Nebraska Medical Center Department of Biochemistry and Molecular Biology and Eppley Cancer Center Omaha NE 68198 USA Vivian Su, University of Hawaii at Manoa Natural Products and Cancer Biology Program, Cancer Research Center of Hawaii Honolulu HI 96813 USA	nmrlearner	Journal club	0	08-14-2010 04:19 AM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off