NMR structure note: N-terminal domain of Thermus thermophilus CdnL

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NMR structure note: N-terminal domain of Thermus thermophilus CdnL

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NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

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07-13-2012, 10:46 PM

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NMR structure note: N-terminal domain of Thermus thermophilus CdnL

NMR structure note: N-terminal domain of Thermus thermophilus CdnL

NMR structure note: N-terminal domain of Thermus thermophilus CdnL

Content Type Journal Article
Category NMR structure note
Pages 1-9
DOI 10.1007/s10858-012-9648-z
Authors
- Aranzazu Gallego-GarcÃ*a, Departamento de GenÃ©tica y MicrobiologÃ*a, Ã?rea de GenÃ©tica (Unidad Asociada al IQFR-CSIC), Facultad de BiologÃ*a, Universidad de Murcia, Regional Campus of International Excellence â??Campus Mare Nostrumâ??, 30100 Murcia, Spain
- Yasmina Mirassou, Instituto de QuÃ*mica FÃ*sica Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain
- Montserrat ElÃ*as-Arnanz, Departamento de GenÃ©tica y MicrobiologÃ*a, Ã?rea de GenÃ©tica (Unidad Asociada al IQFR-CSIC), Facultad de BiologÃ*a, Universidad de Murcia, Regional Campus of International Excellence â??Campus Mare Nostrumâ??, 30100 Murcia, Spain
- S. Padmanabhan, Instituto de QuÃ*mica FÃ*sica Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain
- M. Angeles JimÃ©nez, Instituto de QuÃ*mica FÃ*sica Rocasolano, CSIC, Serrano 119, 28006 Madrid, Spain

- Journal Journal of Biomolecular NMR
- Online ISSN 1573-5001
- Print ISSN 0925-2738

Source: Journal of Biomolecular NMR

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