NMR paper NMR structure of human coactosin-like protein.

		BioNMR > Educational resources > Journal club
[NMR paper] NMR structure of human coactosin-like protein.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

11-24-2010, 10:03 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,777

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR structure of human coactosin-like protein.

NMR structure of human coactosin-like protein.

Related Articles NMR structure of human coactosin-like protein.

J Biomol NMR. 2004 Nov;30(3):353-6

Authors: Liepinsh E, Rakonjac M, Boissonneault V, Provost P, Samuelsson B, Rådmark O, Otting G

PMID: 15754059 [PubMed - indexed for MEDLINE]

Source: PubMed

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Solution NMR structure and dynamics of human apo-S100A1 protein. Solution NMR structure and dynamics of human apo-S100A1 protein. Solution NMR structure and dynamics of human apo-S100A1 protein. J Struct Biol. 2011 Feb 2; Authors: Nowakowski M, Jaremko L, Jaremko M, Zhukov I, Belczyk A, Bierzy?ski A, Ejchart A S100A1 belongs to the EF-hand superfamily of calcium binding proteins. It is a representative of the S100 protein family based on amino acid sequence, three-dimensional structure, and biological function as a calcium signal transmitter. It is a homodimer of noncovalently bound subunits. S100A1, like most...	nmrlearner	Journal club	0	02-08-2011 06:28 PM
Solution structure of the human Tax-interacting protein-1 Solution structure of the human Tax-interacting protein-1 Solution structure of the human Tax-interacting protein-1 Content Type Journal Article Pages 329-334 DOI 10.1007/s10858-009-9361-8 Authors	nmrlearner	Journal club	0	01-09-2011 12:46 PM
[NMR paper] Solution NMR structure of the C-terminal domain of the human protein DEK. Solution NMR structure of the C-terminal domain of the human protein DEK. Related Articles Solution NMR structure of the C-terminal domain of the human protein DEK. Protein Sci. 2004 Aug;13(8):2252-9 Authors: Devany M, Kotharu NP, Matsuo H The chromatin-associated protein DEK was first identified as a fusion protein in patients with a subtype of acute myelogenous leukemia. It has since become associated with diverse human ailments ranging from cancers to autoimmune diseases. Despite much research effort, the biochemical basis for these...	nmrlearner	Journal club	0	11-24-2010 09:51 PM
[NMR paper] Influence of pH on NMR structure and stability of the human prion protein globular do Influence of pH on NMR structure and stability of the human prion protein globular domain. Related Articles Influence of pH on NMR structure and stability of the human prion protein globular domain. J Biol Chem. 2003 Sep 12;278(37):35592-6 Authors: Calzolai L, Zahn R The NMR structure of the globular domain of the human prion protein (hPrP) with residues 121-230 at pH 7.0 shows the same global fold as the previously published structure determined at pH 4.5. It contains three alpha-helices, comprising residues 144-156, 174-194, and 200-228, and...	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR paper] NMR structure of the human doppel protein. NMR structure of the human doppel protein. Related Articles NMR structure of the human doppel protein. J Mol Biol. 2003 Mar 7;326(5):1549-57 Authors: Lührs T, Riek R, Güntert P, Wüthrich K The NMR structure of the recombinant human doppel protein, hDpl(24-152), contains a flexibly disordered "tail" comprising residues 24-51, and a globular domain extending from residues 52 to 149 for which a detailed structure was obtained. The globular domain contains four alpha-helices comprising residues 72-80 (alpha1), 101-115 (alpha2(a)), 117-121...	nmrlearner	Journal club	0	11-24-2010 09:01 PM
[NMR paper] Prion protein NMR structure and familial human spongiform encephalopathies. Prion protein NMR structure and familial human spongiform encephalopathies. Related Articles Prion protein NMR structure and familial human spongiform encephalopathies. Proc Natl Acad Sci U S A. 1998 Sep 29;95(20):11667-72 Authors: Riek R, Wider G, Billeter M, Hornemann S, Glockshuber R, Wüthrich K The refined NMR structure of the mouse prion protein domain mPrP(121-231) and the recently reported NMR structure of the complete 208-residue polypeptide chain of mPrP are used to investigate the structural basis of inherited human transmissible...	nmrlearner	Journal club	0	11-17-2010 11:15 PM
[NMR paper] Determination of the structure of the nucleocapsid protein NCp7 from the human immuno Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Determination of the structure of the nucleocapsid protein NCp7 from the human immunodeficiency virus type 1 by 1H NMR. EMBO J. 1992 Aug;11(8):3059-65 Authors: Morellet N, Jullian N, De Rocquigny H, Maigret B, Darlix JL, Roques BP The retroviral gag nucleocapsid protein NCp7 (72 amino acids)...	nmrlearner	Journal club	0	08-21-2010 11:45 PM
[NMR paper] Protein secondary structure determination by NMR. Application with recombinant human Protein secondary structure determination by NMR. Application with recombinant human cyclophilin. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Protein secondary structure determination by NMR. Application with recombinant human cyclophilin. FEBS Lett. 1991 Jul 22;285(2):237-47 Authors: WÃ¼thrich K, Spitzfaden C, Memmert K, Widmer H, Wider G It is a unique trait of the NMR method for protein structure determination that a description of the polypeptide secondary...	nmrlearner	Journal club	0	08-21-2010 11:12 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off