NMR structure of the AUX/IAA PB1 domain of PsIAA4 [Plant Biology]

		BioNMR > Educational resources > Journal club
NMR structure of the AUX/IAA PB1 domain of PsIAA4 [Plant Biology]

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-13-2015, 12:28 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,734

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR structure of the AUX/IAA PB1 domain of PsIAA4 [Plant Biology]

NMR structure of the AUX/IAA PB1 domain of PsIAA4 [Plant Biology]

Dinesh, D. C., Kovermann, M., Gopalswamy, M., Hellmuth, A., Calderon Villalobos, L. I. A., Lilie, H., Balbach, J., Abel, S....
Date: 2015-05-12

The plant hormone auxin activates primary response genes by facilitating proteolytic removal of AUXIN/INDOLE-3-ACETIC ACID (AUX/IAA)-inducible repressors, which directly bind to transcriptional AUXIN RESPONSE FACTORS (ARF). Most AUX/IAA and ARF proteins share highly conserved C-termini mediating homotypic and heterotypic interactions within and between both protein families. The high-resolution NMR structure... Read More

PNAS:
Number: 19
Volume: 112

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
[NMR paper] "In-plant" NMR: Analysis of the Intact Plant Vesicularia dubyana by High Resolution NMR Spectroscopy. "In-plant" NMR: Analysis of the Intact Plant Vesicularia dubyana by High Resolution NMR Spectroscopy. "In-plant" NMR: Analysis of the Intact Plant Vesicularia dubyana by High Resolution NMR Spectroscopy. Molecules. 2015;20(3):4359-4368 Authors: Kutyshenko VP, Beskaravayny P, Uversky VN Abstract We present here the concept of "in-plant" NMR and show that high-resolution NMR spectroscopy is suitable for the analysis of intact plants and can be used to follow the changes in the intraorganismal molecular composition over long time...	nmrlearner	Journal club	0	03-12-2015 10:33 AM
Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain Source: Journal of Biomolecular NMR	nmrlearner	Journal club	0	08-30-2014 11:00 PM
[NMR paper] Solid-State NMR Investigations of Peptide-Lipid Interactions of the Transmembrane Domain of A Plant-Derived Protein, Hcf106. Solid-State NMR Investigations of Peptide-Lipid Interactions of the Transmembrane Domain of A Plant-Derived Protein, Hcf106. http://www.bionmr.com//www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--linkinghub.elsevier.com-ihub-images-PubMedLink.gif Related Articles Solid-State NMR Investigations of Peptide-Lipid Interactions of the Transmembrane Domain of A Plant-Derived Protein, Hcf106. Chem Phys Lipids. 2013 Sep 24; Authors: Zhang L, Liu L, Maltsev S, Lorigan GA, Dabney-Smith C Abstract The chloroplast twin arginine translocation...	nmrlearner	Journal club	0	10-01-2013 11:15 PM
Solid-State NMR Investigations of Peptide-Lipid Interactions of the Transmembrane Domain of A Plant-Derived Protein, Hcf106 Solid-State NMR Investigations of Peptide-Lipid Interactions of the Transmembrane Domain of A Plant-Derived Protein, Hcf106 Publication date: Available online 24 September 2013 Source:Chemistry and Physics of Lipids</br> Author(s): Lei Zhang , Lishan Liu , Sergey Maltsev , Gary A. Lorigan , Carole Dabney-Smith</br> The chloroplast twin arginine translocation system transports highly folded precursor proteins across the thylakoid using the protonmotive force as its only energy source. Hcf106 and another thylakoid protein, cpTatC compose the precursor receptor...	nmrlearner	Journal club	0	09-25-2013 11:15 AM
Intra- and intermolecular translocation of the bi-domain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR [Biophysics and Computational Biology] Intra- and intermolecular translocation of the bi-domain transcription factor Oct1 characterized by liquid crystal and paramagnetic NMR Takayama, Y., Clore, G. M.... Date: 2011-05-31 The intra- and intermolecular translocation processes whereby the bi-domain transcription factor Oct1 searches for its specific DNA target site have been investigated by residual dipolar coupling (RDC) and paramagnetic relaxation enhancement (PRE) measurements. The RDC data show that the orientation of the POUS and POUHD domains of Oct1 relative to the long axis of the DNA is the same for specific and...	nmrlearner	Journal club	0	05-31-2011 11:41 PM
Structure and Interactions of Plant Cell-Wall Polysaccharides by Two- and Three-Dimensional Magic-Angle-Spinning Solid-State NMR Structure and Interactions of Plant Cell-Wall Polysaccharides by Two- and Three-Dimensional Magic-Angle-Spinning Solid-State NMR http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi101795q/aop/images/medium/bi-2010-01795q_0008.gif Biochemistry DOI: 10.1021/bi101795q http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/9XLFFfb1pRU More...	nmrlearner	Journal club	0	01-21-2011 03:31 AM
[NMR paper] Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensin Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action. Related Articles Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action. J Mol Biol. 2002 Jan 25;315(4):749-57 Authors: Almeida MS, Cabral KM, Kurtenbach E, Almeida FC, Valente AP Pisum sativum defensin 1 (Psd1) is a 46 amino acid residue plant defensin isolated from seeds of pea. The three-dimensional structure in...	nmrlearner	Journal club	0	11-24-2010 08:49 PM
[NMR paper] Direct observation of cell wall structure in living plant tissues by solid-state C NM Direct observation of cell wall structure in living plant tissues by solid-state C NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Direct observation of cell wall structure in living plant tissues by solid-state C NMR spectroscopy. Plant Physiol. 1990 Jan;92(1):61-5 Authors: Jarvis MC, Apperley DC Solid-state (13)C nuclear magnetic resonance (NMR) spectra of the following intact plant tissues were recorded by the crosspolarization...	nmrlearner	Journal club	0	08-21-2010 10:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off