BioNMR
NMR aggregator & online community since 2003
BioNMR    
Learn or help to learn NMR - get free NMR books!
 

Go Back   BioNMR > Educational resources > Journal club
Advanced Search
Home Forums Wiki NMR feeds Downloads Register Today's Posts



Jobs Groups Conferences Literature Pulse sequences Software forums Programs Sample preps Web resources BioNMR issues


Webservers
NMR processing:
MDD
NMR assignment:
Backbone:
Autoassign
MARS
UNIO Match
PINE
Side-chains:
UNIO ATNOS-Ascan
NOEs:
UNIO ATNOS-Candid
UNIO Candid
ASDP
Structure from NMR restraints:
Ab initio:
GeNMR
Cyana
XPLOR-NIH
ASDP
UNIO ATNOS-Candid
UNIO Candid
Fragment-based:
BMRB CS-Rosetta
Rosetta-NMR (Robetta)
Template-based:
GeNMR
I-TASSER
Refinement:
Amber
Structure from chemical shifts:
Fragment-based:
WeNMR CS-Rosetta
BMRB CS-Rosetta
Homology-based:
CS23D
Simshift
Torsion angles from chemical shifts:
Preditor
TALOS
Promega- Proline
Secondary structure from chemical shifts:
CSI (via RCI server)
TALOS
MICS caps, β-turns
d2D
PECAN
Flexibility from chemical shifts:
RCI
Interactions from chemical shifts:
HADDOCK
Chemical shifts re-referencing:
Shiftcor
UNIO Shiftinspector
LACS
CheckShift
RefDB
NMR model quality:
NOEs, other restraints:
PROSESS
PSVS
RPF scores
iCing
Chemical shifts:
PROSESS
CheShift2
Vasco
iCing
RDCs:
DC
Anisofit
Pseudocontact shifts:
Anisofit
Protein geomtery:
Resolution-by-Proxy
PROSESS
What-If
iCing
PSVS
MolProbity
SAVES2 or SAVES4
Vadar
Prosa
ProQ
MetaMQAPII
PSQS
Eval123D
STAN
Ramachandran Plot
Rampage
ERRAT
Verify_3D
Harmony
Quality Control Check
NMR spectrum prediction:
FANDAS
MestReS
V-NMR
Flexibility from structure:
Backbone S2
Methyl S2
B-factor
Molecular dynamics:
Gromacs
Amber
Antechamber
Chemical shifts prediction:
From structure:
Shiftx2
Sparta+
Camshift
CH3shift- Methyl
ArShift- Aromatic
ShiftS
Proshift
PPM
CheShift-2- Cα
From sequence:
Shifty
Camcoil
Poulsen_rc_CS
Disordered proteins:
MAXOCC
Format conversion & validation:
CCPN
From NMR-STAR 3.1
Validate NMR-STAR 3.1
NMR sample preparation:
Protein disorder:
DisMeta
Protein solubility:
camLILA
ccSOL
Camfold
camGroEL
Zyggregator
Isotope labeling:
UPLABEL
Solid-state NMR:
sedNMR


Reply
 
Thread Tools Search this Thread Rate Thread Display Modes
  #1  
Old 11-24-2010, 09:16 PM
nmrlearner's Avatar
Senior Member
 
Join Date: Jan 2005
Posts: 23,734
Points: 193,617, Level: 100
Points: 193,617, Level: 100 Points: 193,617, Level: 100 Points: 193,617, Level: 100
Level up: 0%, 0 Points needed
Level up: 0% Level up: 0% Level up: 0%
Activity: 50.7%
Activity: 50.7% Activity: 50.7% Activity: 50.7%
Last Achievements
Award-Showcase
NMR Credits: 0
NMR Points: 193,617
Downloads: 0
Uploads: 0
Default NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain.

NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain.

Related Articles NMR structure of the apoptosis- and inflammation-related NALP1 pyrin domain.

Structure. 2003 Oct;11(10):1199-205

Authors: Hiller S, Kohl A, Fiorito F, Herrmann T, Wider G, Tschopp J, Grütter MG, Wüthrich K

Signaling in apoptosis and inflammation is often mediated by proteins of the death domain superfamily in the Fas/FADD/Caspase-8 or the Apaf-1/Caspase-9 pathways. This superfamily currently comprises the death domain (DD), death effector domain (DED), caspase recruitment domain (CARD), and pyrin domain (PYD) subfamilies. The PYD subfamily is most abundant, but three-dimensional structures are only available for the subfamilies DD, DED, and CARD, which have an antiparallel arrangement of six alpha helices as common fold. This paper presents the NMR structure of PYD of NALP1, a protein that is involved in the innate immune response and is a component of the inflammasome. The structure of NALP1 PYD differs from all other known death domain superfamily structures in that the third alpha helix is replaced by a flexibly disordered loop. This unique feature appears to relate to the molecular basis of familial Mediterranean fever (FMF), a genetic disease caused by single-point mutations.

PMID: 14527388 [PubMed - indexed for MEDLINE]



Source: PubMed
Reply With Quote


Did you find this post helpful? Yes | No

Reply
Similar Threads
Thread Thread Starter Forum Replies Last Post
[NMR tweet] Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX
Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX Published by InnerBody (InnerBody) on 2011-04-11T18:30:37Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 06:34 PM
[NMR tweet] Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX
Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX Published by 4Hypertension (4Hypertension) on 2011-04-11T18:30:37Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 06:34 PM
[NMR tweet] Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX
Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX Published by 4Depression (4Depression) on 2011-04-11T18:30:37Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 06:34 PM
[NMR tweet] Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX
Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX Published by 4Arthritis (4Arthritis) on 2011-04-11T18:30:37Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 06:34 PM
[NMR tweet] Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX
Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX Published by 4Strokes (4Strokes) on 2011-04-11T18:30:36Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 06:34 PM
[NMR tweet] Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX
Rapid quantification of inflammation in tissue samples using perfluorocarbon ...: Quantification of inflammation... http://bit.ly/e72PgX Published by 4HeartDisease (4HeartDisease) on 2011-04-11T18:30:36Z Source: Twitter
nmrlearner Twitter NMR 0 04-11-2011 06:34 PM
[NMR paper] Solution structure of the peptidoglycan binding domain of Bacillus subtilis cell wall lytic enzyme CwlC: characterization of the sporulation-related repeats by NMR.
Solution structure of the peptidoglycan binding domain of Bacillus subtilis cell wall lytic enzyme CwlC: characterization of the sporulation-related repeats by NMR. Related Articles Solution structure of the peptidoglycan binding domain of Bacillus subtilis cell wall lytic enzyme CwlC: characterization of the sporulation-related repeats by NMR. Biochemistry. 2005 Aug 2;44(30):10153-63 Authors: Mishima M, Shida T, Yabuki K, Kato K, Sekiguchi J, Kojima C Bacillus subtilis CwlC is a cell wall lytic N-acetylmuramoyl-l-alanine amidase that plays an...
nmrlearner Journal club 0 12-01-2010 06:56 PM
[NMR paper] NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis p
NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis protein XIAP. Related Articles NMR structure and mutagenesis of the third Bir domain of the inhibitor of apoptosis protein XIAP. J Biol Chem. 2000 Oct 27;275(43):33777-81 Authors: Sun C, Cai M, Meadows RP, Xu N, Gunasekera AH, Herrmann J, Wu JC, Fesik SW The inhibitor of apoptosis proteins (IAPs) regulate the caspase family of cysteine proteases, which play an important role in the execution of programmed cell death. Human X-linked inhibitor of apoptosis...
nmrlearner Journal club 0 11-19-2010 08:29 PM



Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is On
Trackbacks are Off
Pingbacks are Off
Refbacks are Off



BioNMR advertisements to pay for website hosting and domain registration. Nobody does it for us.



Powered by vBulletin® Version 3.7.3
Copyright ©2000 - 2024, Jelsoft Enterprises Ltd.
Copyright, BioNMR.com, 2003-2013
Search Engine Friendly URLs by vBSEO 3.6.0

All times are GMT. The time now is 09:50 PM.


Map