Antifreeze proteins (AFPs) are a structurally diverse class of proteins that bind to ice and inhibit its growth in a noncolligative manner. This adsorption-inhibition mechanism operating at the ice surface results in a lowering of the (nonequilibrium) freezing point below the melting point. A lowering of approximately 1 degree C, which is sufficient to prevent fish from freezing in ice-laden seawater, requires millimolar AFP levels in the blood. The solubility of AFPs at these millimolar concentrations and the small size of the AFPs (typically 3-15 kDa) make them ideal subjects for NMR analysis. Although fish AFPs are naturally abundant, seasonal expression, restricted access to polar fishes, and difficulties in separating numerous similar isoforms have made protein expression the method of choice for producing AFPs for structural studies. Expression of recombinant AFPs has also facilitated NMR analysis by permitting isotopic labeling with 15N and 13C and has permitted mutations to be made to help with the interpretation of NMR data. NMR analysis has recently solved two AFP structures and provided valuable information about the disposition of ice-binding side chains in a third. The potential exists to solve other AFP structures, including the newly described insect AFPs, and to use solid-state NMR techniques to address fundamental questions about the nature of the interaction between AFPs and ice.
Crystallography reveals secrets of nature's antifreeze - physicsworld.com
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Crystallography reveals secrets of nature's antifreeze
physicsworld.com
Ansgar Siemer of Columbia University in New York City, who has used nuclear magnetic resonance (NMR) to identify the ice-binding sites on antifreeze proteins, believes this detailed picture of the protein's structure will be useful to researchers. ...
Crystallography reveals secrets of nature's antifreeze - physicsworld.com
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04-13-2011 01:15 AM
Choosing membrane mimetics for NMR structural studies of transmembrane proteins.
Choosing membrane mimetics for NMR structural studies of transmembrane proteins.
Choosing membrane mimetics for NMR structural studies of transmembrane proteins.
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Authors: Warschawski DE, Arnold AA, Beaugrand M, Gravel A, Chartrand E, Marcotte I
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Transferred NOESY NMR studies of biotin mimetic peptide (FSHPQNT) bound to streptavidin: A structural model for studies of peptide-protein interactions.
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02-08-2011 06:28 PM
NMR characterizations of the ice binding surface of an antifreeze protein.
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PLoS One. 2010;5(12):e15682
Authors: Hong J, Hu Y, Li C, Jia Z, Xia B, Jin C
Antifreeze protein (AFP) has a unique function of reducing solution freezing temperature to protect organisms from ice damage. However, its functional mechanism is not well understood. An intriguing question concerning AFP function is how the high selectivity for ice ligand is achieved in the presence of free water of...
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01-07-2011 11:21 PM
[NMR paper] Solid-state 17O NMR as a probe for structural studies of proteins in biomembranes.
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11-24-2010 10:03 PM
[NMR paper] Hydrogen bonding on the ice-binding face of a beta-helical antifreeze protein indicat
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Authors: Daley ME, Graether SP, Sykes BD
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11-24-2010 10:01 PM
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J Biomol NMR. 2004 Jun;29(2):139-50
Authors: Daley ME, Sykes BD
The dynamics of threonine side chains of the Tenebrio molitor antifreeze protein (TmAFP) were investigated using natural abundance (13)C NMR. In TmAFP, the array of threonine residues on one face of the protein is responsible...
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11-24-2010 09:51 PM
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Structural information on membrane proteins lags far behind that on soluble proteins, in large part due to difficulties producing homogeneous, stable, structurally relevant samples in a membrane-like environment....