NMR paper NMR of plant proteins.

		BioNMR > Educational resources > Journal club
[NMR paper] NMR of plant proteins.

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

04-25-2013, 10:38 AM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR of plant proteins.

NMR of plant proteins.

NMR of plant proteins.

Prog Nucl Magn Reson Spectrosc. 2013 May;71:1-34

Authors: Kaas Q, Craik DJ

PMID: 23611313 [PubMed - in process]

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
NMR of plant proteins NMR of plant proteins Available online 31 January 2013 Publication year: 2013 Source:Progress in Nuclear Magnetic Resonance Spectroscopy</br> </br> NMR has played an important role in determining the structures, dynamics and interactions of a wide range of plant proteins. This article provides an overview of the NMR techniques that have been used in these studies and describes selected examples from major classes of plant proteins to illustrate applications of these techniques. These classes include defensins, cyclotides, lectins, photosynthetic proteins, transcription...	nmrlearner	Journal club	0	02-01-2013 03:04 PM
Discovery of plant proteins may boost agricultural yields, biofuel ... - R & D Magazine Discovery of plant proteins may boost agricultural yields, biofuel ... - R & D Magazine <img alt="" height="1" width="1" /> Discovery of plant proteins may boost agricultural yields, biofuel ... R & D Magazine They dubbed these fatty-acid binding proteins FAP1, FAP2, and FAP3. ... next week of a new 0.75-mm solid state nuclear magnetic resonance (NMR) probe. and more » Read here	nmrlearner	Online News	0	06-13-2012 11:34 AM
Structure and Interactions of Plant Cell-Wall Polysaccharides by Two- and Three-Dimensional Magic-Angle-Spinning Solid-State NMR Structure and Interactions of Plant Cell-Wall Polysaccharides by Two- and Three-Dimensional Magic-Angle-Spinning Solid-State NMR http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/bi101795q/aop/images/medium/bi-2010-01795q_0008.gif Biochemistry DOI: 10.1021/bi101795q http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/9XLFFfb1pRU More...	nmrlearner	Journal club	0	01-21-2011 03:31 AM
Chemist/Pilot Plant Research Technician - Kelly Scientific Resources - Baytown, TX, United States Chemist/Pilot Plant Research Technician - Kelly Scientific Resources - Baytown, TX, United States <DIV> <DIV>Kelly Scientific is seeking a Chemist - Research Technician working with reactors, polymerizations and sample prep for pilot units. <DIV>(M.Sc. or B.Sc. preferred) with knowledge of organic synthesis chemistry, ligand design, metal complexation, air-moisture sensitive techniques, application of NMR spectroscopy, and other analytical cha... More...	nmrlearner	Job marketplace	0	01-18-2011 02:50 PM
Plant Cell-Wall Cross-Links by REDOR NMR Spectroscopy. Plant Cell-Wall Cross-Links by REDOR NMR Spectroscopy. Related Articles Plant Cell-Wall Cross-Links by REDOR NMR Spectroscopy. J Am Chem Soc. 2010 Oct 21; Authors: Cegelski L, O'Connor RD, Stueber D, Singh M, Poliks B, Schaefer J We present a new method that integrates selective biosynthetic labeling and solid-state NMR detection to identify in situ important protein cross-links in plant cell walls. We have labeled soybean cells by growth in media containing l-tyrosine and l-tyrosine, compared whole-cell and cell-wall (13)C CPMAS spectra, and...	nmrlearner	Journal club	0	10-23-2010 05:48 PM
Plant Cell-Wall Cross-Links by REDOR NMR Spectroscopy Plant Cell-Wall Cross-Links by REDOR NMR Spectroscopy Lynette Cegelski, Robert D. O’Connor, Dirk Stueber, Manmilan Singh, Barbara Poliks and Jacob Schaefer http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja104827k/aop/images/medium/ja-2010-04827k_0006.gif Journal of the American Chemical Society DOI: 10.1021/ja104827k http://feeds.feedburner.com/~ff/acs/jacsat?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/jacsat/~4/1kI0vIFK7eU	nmrlearner	Journal club	0	10-22-2010 07:34 AM
[NMR paper] Structural studies by proton-NMR spectroscopy of plant horseradish peroxidase C, the Structural studies by proton-NMR spectroscopy of plant horseradish peroxidase C, the wild-type recombinant protein from Escherichia coli and two protein variants, Phe41----Val and Arg38----Lys. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www3.interscience.wiley.com-aboutus-images-wiley_interscience_pubmed_logo_FREE_120x27.gif Related Articles Structural studies by proton-NMR spectroscopy of plant horseradish peroxidase C, the wild-type recombinant protein from Escherichia coli and two protein variants, Phe41----Val and Arg38----Lys. Eur J Biochem. 1992 Jul...	nmrlearner	Journal club	0	08-21-2010 11:45 PM
[NMR paper] Direct observation of cell wall structure in living plant tissues by solid-state C NM Direct observation of cell wall structure in living plant tissues by solid-state C NMR spectroscopy. http://www.ncbi.nlm.nih.gov/corehtml/query/egifs/http:--www.pubmedcentral.nih.gov-corehtml-pmc-pmcgifs-pubmed-pmc.gif Related Articles Direct observation of cell wall structure in living plant tissues by solid-state C NMR spectroscopy. Plant Physiol. 1990 Jan;92(1):61-5 Authors: Jarvis MC, Apperley DC Solid-state (13)C nuclear magnetic resonance (NMR) spectra of the following intact plant tissues were recorded by the crosspolarization...	nmrlearner	Journal club	0	08-21-2010 10:48 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off