NMR paper NMR illuminates intrinsic disorder

		BioNMR > Educational resources > Journal club
[NMR paper] NMR illuminates intrinsic disorder

Webservers

NMR processing:

MDD

NMR assignment:

Backbone:

Side-chains:

NOEs:

Structure from NMR restraints:

Ab initio:

Fragment-based:

Rosetta-NMR (Robetta)

Template-based:

GeNMR

I-TASSER

Refinement:

Amber

Structure from chemical shifts:

Fragment-based:

Homology-based:

Torsion angles from chemical shifts:

Preditor

TALOS

Promega- Proline

Secondary structure from chemical shifts:

CSI (via RCI server)

TALOS

MICS caps, β-turns

d2D

PECAN

Flexibility from chemical shifts:

RCI

Interactions from chemical shifts:

HADDOCK

Chemical shifts re-referencing:

NMR model quality:

NOEs, other restraints:

Chemical shifts:

RDCs:

Pseudocontact shifts:

Protein geomtery:

SAVES2 or SAVES4

Quality Control Check

NMR spectrum prediction:

FANDAS

MestReS

V-NMR

Flexibility from structure:

Backbone S2

Methyl S2

B-factor

Molecular dynamics:

Gromacs

Amber

Antechamber

Chemical shifts prediction:

From structure:

Shiftx2

Sparta+

Camshift

CH3shift- Methyl

ArShift- Aromatic

ShiftS

Proshift

PPM

CheShift-2- Cα

From sequence:

Shifty

Camcoil

Poulsen_rc_CS

Disordered proteins:

MAXOCC

Format conversion & validation:

CCPN

From NMR-STAR 3.1

Validate NMR-STAR 3.1

NMR sample preparation:

Protein disorder:

DisMeta

Protein solubility:

Isotope labeling:

Solid-state NMR:

Thread Tools

Search this Thread

Rate Thread

Display Modes

05-06-2021, 11:45 PM

nmrlearner

Senior Member

Join Date: Jan 2005

Posts: 23,732

Points: 193,617, Level: 100

Level up: 0%, 0 Points needed

Activity: 50.7%

Last Achievements

Award-Showcase

NMR Credits: 0

NMR Points: 193,617

Downloads: 0

Uploads: 0

NMR illuminates intrinsic disorder

NMR illuminates intrinsic disorder

Nuclear magnetic resonance (NMR) has long been instrumental in the characterization of intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs). This method continues to offer rich insights into the nature of IDPs in solution, especially in combination with other biophysical methods such as small-angle scattering, single-molecule fluorescence, electron paramagnetic resonance (EPR), and mass spectrometry. Substantial advances have been made in recent years in studies...

More...

Did you find this post helpful?

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Hidden Structural Codes in Protein Intrinsic Disorder Hidden Structural Codes in Protein Intrinsic Disorder http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.7b00721/20171006/images/medium/bi-2017-00721n_0006.gif Biochemistry DOI: 10.1021/acs.biochem.7b00721 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/mMCQe_lwg8U More...	nmrlearner	Journal club	0	10-07-2017 11:01 AM
Intrinsic Disorder to Order Transitions in the Scaffold Phosphoprotein P from the Respiratory Syncytial Virus RNA Polymerase Complex Intrinsic Disorder to Order Transitions in the Scaffold Phosphoprotein P from the Respiratory Syncytial Virus RNA Polymerase Complex http://pubs.acs.org/appl/literatum/publisher/achs/journals/content/bichaw/0/bichaw.ahead-of-print/acs.biochem.5b01332/20160304/images/medium/bi-2015-01332x_0009.gif Biochemistry DOI: 10.1021/acs.biochem.5b01332 http://feeds.feedburner.com/~ff/acs/bichaw?d=yIl2AUoC8zA http://feeds.feedburner.com/~r/acs/bichaw/~4/-tI2kRuxzVo More...	nmrlearner	Journal club	0	03-04-2016 10:23 PM
[NMR paper] NMR illuminates the pathways to ALS. NMR illuminates the pathways to ALS. Related Articles NMR illuminates the pathways to ALS. Elife. 2015;4 Authors: Xie T, Kalodimos CG Abstract A combination of NMR techniques is able to explore the structure of short-lived protein conformations.	nmrlearner	Journal club	0	06-24-2015 01:08 PM
[NMR images] figure 1 evaluation of abundance of intrinsic disorder in the yeast ... https://dfzljdn9uc3pi.cloudfront.net/2013/2/1/fig-1-2x.jpg 20/03/2014 12:45:23 PM GMT figure 1 evaluation of abundance of intrinsic disorder in the yeast ... More...	nmrlearner	NMR pictures	0	03-20-2014 12:44 PM
Modulation of allostery by protein intrinsic disorder - Nature.com Modulation of allostery by protein intrinsic disorder - Nature.com <img alt="" height="1" width="1" /> Modulation of allostery by protein intrinsic disorder Nature.com Previous attempts at measuring dissociation constants (Kd) for E1A complexes with CBP by isothermal titration calorimetry (ITC) and nuclear magnetic resonance (NMR) failed because E1A is highly aggregation-prone. Even at concentrations as low as 10 μM ... Read here	nmrlearner	Online News	0	06-19-2013 08:55 PM
[NMR tweet] Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy: We pre... http://t.co/6ViT8qh Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy: We pre... http://t.co/6ViT8qh Published by peterpassoli (Peter Passoli) on 2011-08-28T20:45:32Z Source: Twitter	nmrlearner	Twitter NMR	0	08-28-2011 08:55 PM
[NMR tweet] Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy (RSC) http://t.co/yBHFpgy Towards a robust description of intrinsic protein disorder using nuclear magnetic resonance spectroscopy (RSC) http://t.co/yBHFpgy Published by ScienceLatest (Science news) on 2011-08-27T15:02:34Z Source: Twitter	nmrlearner	Twitter NMR	0	08-27-2011 03:04 PM
Solid-state 2H NMR relaxation illuminates functional dynamics of retinal cofactor in membrane activation of rhodopsin. Solid-state 2H NMR relaxation illuminates functional dynamics of retinal cofactor in membrane activation of rhodopsin. Solid-state 2H NMR relaxation illuminates functional dynamics of retinal cofactor in membrane activation of rhodopsin. Proc Natl Acad Sci U S A. 2011 Apr 28; Authors: Struts AV, Salgado GF, Brown MF Rhodopsin is a canonical member of the family of G protein-coupled receptors, which transmit signals across cellular membranes and are linked to many drug interventions in humans. Here we show that solid-state (2)H NMR relaxation...	nmrlearner	Journal club	0	04-30-2011 12:36 PM

« Previous Thread | Next Thread »

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is On Trackbacks are Off Pingbacks are Off Refbacks are Off