Related ArticlesNMR evidence of GM1-induced conformational change of substance P using isotropic bicelles.
Biochim Biophys Acta. 2010 Oct 8;
Authors: Gayen A, Goswami SK, Mukhopadhyay C
Substance P (SP) is one of the target neurotransmitters associated with diseases related to chronic inflammation, pain and depression. The selective receptor for SP, NK(1)R is located in the heterogeneous microdomains or caveolaes in membrane. Gangliosides, specifically GM1, are markers of these heterogeneous sites. Also, gangliosides are considered as important regulatory elements in cell-cell recognition and cell signaling. In the present work, we describe the conformations of Substance P in presence of ternary membrane systems containing GM1 at the physiological concentration. SP is mostly unstructured in water, but appears as extended 3(10) helical or Turn III in isotropic bicelles, more pronounced in presence of GM1. NMR results suggest that, in the GM1 containing bicelles, the peptide is more inserted into the membrane with its C-terminus, while N-terminus lies close to the membrane-water interface. The NMR-derived conformation of SP in GM1 bicelles is docked on homology modeled NK(1)R and resulting interactions satisfy reported mutagenesis, fluorescence, photo-affinity labeling and modeling data. The results highlight efficacy of GM1 in membrane in providing structure in an otherwise flexible neurotransmitter Substance P; thus providing indication that it may be useful also for other neurotransmitter peptides/proteins associated with membrane.
PMID: 20937248 [PubMed - as supplied by publisher]
[Question from NMRWiki Q&A forum] Distinguish between protonation and conformational change?
Distinguish between protonation and conformational change?
Hi all,
In a folded protein with 13C-delta labeled glutamates, how can one distinguish between chemical shift due to protonation and chemical shift due to conformational changes?
Thanks.
nmrlearner
News from other NMR forums
0
02-24-2011 11:30 PM
NMR analysis reveals 17?-estradiol induced conformational change in ER? ligand binding domain expressed in E. coli.
NMR analysis reveals 17?-estradiol induced conformational change in ER? ligand binding domain expressed in E. coli.
NMR analysis reveals 17?-estradiol induced conformational change in ER? ligand binding domain expressed in E. coli.
Mol Biol Rep. 2010 Dec 12;
Authors: Paramanik V, Thakur MK
Nuclear magnetic resonance (NMR) spectroscopy is a useful biophysical technique to study the ligand-protein interaction. In this report, we have used bacterially produced ER? and its domains for studying the functional analysis of ligand-protein interaction....
nmrlearner
Journal club
0
12-15-2010 12:03 PM
[NMR paper] Detection of a conformational change in maltose binding protein by (129)Xe NMR spectr
Detection of a conformational change in maltose binding protein by (129)Xe NMR spectroscopy.
Related Articles Detection of a conformational change in maltose binding protein by (129)Xe NMR spectroscopy.
J Am Chem Soc. 2001 Sep 5;123(35):8616-7
Authors: Rubin SM, Spence MM, Dimitrov IE, Ruiz EJ, Pines A, Wemmer DE
nmrlearner
Journal club
0
11-19-2010 08:44 PM
[NMR paper] NMR structure of free RGS4 reveals an induced conformational change upon binding Galp
NMR structure of free RGS4 reveals an induced conformational change upon binding Galpha.
Related Articles NMR structure of free RGS4 reveals an induced conformational change upon binding Galpha.
Biochemistry. 2000 Jun 20;39(24):7063-73
Authors: Moy FJ, Chanda PK, Cockett MI, Edris W, Jones PG, Mason K, Semus S, Powers R
Heterotrimeric guanine nucleotide-binding proteins (G-proteins) are transducers in many cellular transmembrane signaling systems where regulators of G-protein signaling (RGS) act as attenuators of the G-protein signal cascade...
nmrlearner
Journal club
0
11-18-2010 09:15 PM
[NMR paper] Irreversible conformational change of bacterio-opsin induced by binding of retinal du
Irreversible conformational change of bacterio-opsin induced by binding of retinal during its reconstitution to bacteriorhodopsin, as studied by (13)C NMR.
Related Articles Irreversible conformational change of bacterio-opsin induced by binding of retinal during its reconstitution to bacteriorhodopsin, as studied by (13)C NMR.
J Biochem. 2000 May;127(5):861-9
Authors: Yamaguchi S, Tuzi S, Tanio M, Naito A, Lanyi JK, Needleman R, Saitô H
We compared (13)C NMR spectra of Ala- and Val-labeled bacterio-opsin (bO), produced either by bleaching bR...
nmrlearner
Journal club
0
11-18-2010 09:15 PM
[NMR paper] NMR evidence for a conformational adaptation of apolipophorin III upon lipid associat
NMR evidence for a conformational adaptation of apolipophorin III upon lipid association.
Related Articles NMR evidence for a conformational adaptation of apolipophorin III upon lipid association.
Biochem Cell Biol. 1998;76(2-3):276-83
Authors: Wang J, Sahoo D, Sykes BD, Ryan RO
A characteristic property of amphipathic exchangeable apolipoproteins is an ability to exist alternately in lipid-free and lipid-bound states. In the present study, we have used 1H-15N-heteronuclear single quantum correlation spectroscopy to probe structural changes of...
nmrlearner
Journal club
0
11-17-2010 11:06 PM
[NMR paper] Evidence for oxidation-state-dependent conformational changes in human ferredoxin fro
Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear, multidimensional NMR spectroscopy.
Related Articles Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear, multidimensional NMR spectroscopy.
Biochemistry. 1998 Mar 17;37(11):3965-73
Authors: Xia B, Volkman BF, Markley JL
Human ferredoxin belongs to the vertebrate ferredoxin family which includes bovine adrenodoxin. It is a small (13.8 kDa) acidic protein with a cluster. It functions as an electron...
nmrlearner
Journal club
0
11-17-2010 11:06 PM
[NMR paper] Mapping the nucleotide-dependent conformational change of human N-ras p21 in solution
Mapping the nucleotide-dependent conformational change of human N-ras p21 in solution by heteronuclear-edited proton-observed NMR methods.
Related Articles Mapping the nucleotide-dependent conformational change of human N-ras p21 in solution by heteronuclear-edited proton-observed NMR methods.
Biochemistry. 1993 Jul 6;32(26):6763-72
Authors: Hu JS, Redfield AG
Heteronuclear-edited proton-detected NMR methods are used to study the nucleotide-dependent conformational change between GDP- and GTP gamma S-bound forms of human N-ras p21. Amide...