NMR-Detected Brownian Dynamics of ?B-Crystallin over a Wide Range of Concentrations.
Biophys J. 2015 Jan 6;108(1):98-106
Authors: Roos M, Link S, Balbach J, Krushelnitsky A, Saalwächter K
Abstract
Knowledge about the global translational and rotational motion of proteins under crowded conditions is highly relevant for understanding the function of proteins in*vivo. This holds in particular for human ?B-crystallin, which is strongly crowded in*vivo and inter alia responsible for preventing cataracts. Quantitative information on translational and rotational diffusion is not readily available, and we here demonstrate an approach that combines pulsed-field-gradient NMR for translational diffusion and proton T1?/T2 relaxation-time measurements for rotational diffusion, thus overcoming obstacles encountered in previous studies. The relaxation times measured at variable temperature provide a quantitative measure of the correlation function of protein tumbling, which cannot be approximated by a single exponential, because two components are needed for a minimal and adequate description of the data. We find that at high protein concentrations, rotational diffusion is decoupled from translational diffusion, the latter following the macroscopic viscosity change almost quantitatively, resembling the behavior of spherical colloids. Analysis of data reported in the literature shows that well-packed globular proteins follow a scaling relation between the hydrodynamic radius and the molar mass, Rh ~ M(1/d), with a fractal dimension of d ~ 2.5 rather than 3. Despite its oligomeric nature, Rh of ?B-crystallin as derived from both NMR methods is found to be fully consistent with this relation.
PMID: 25564856 [PubMed - as supplied by publisher]
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J Biol Chem. 2013 May 3;
Authors: Esposito G, Garvey M, Alverdi V, Pettirossi F, Corazza A, Fogolari F, Polano M, Mangione PP, Giorgetti S, Stoppini M, Rekas A, Bellotti V, Heck AJ, Carver JA...
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From NMR Relaxation to Fractional Brownian Dynamics in Proteins : Results from a Virtual Experiment.
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Authors: Calligari PA, Calandrini V, Kneller GR, Abergel D
In a recent simulation study it has been shown that the time correlation functions probed by nuclear magnetic resonance (NMR) relaxation spectroscopy of proteins are well described by a fractional Brownian dynamics model, which accounts for the wide spectrum of...
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Authors: Kuwata K, Matumoto T, Cheng H, Nagayama K, James TL, Roder H
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[NMR900 blog] World Wide Magnetic Resonance Conference 2010
World Wide Magnetic Resonance Conference 2010
Dear Colleague,
The WWMR2010 Conference (joint EUROMAR 2010 and 17th ISMAR Conference) in Florence (Italy, July 4th-9th) is approaching fast. Registered attendees are growing daily! Please visit http://www.cerm.unifi.it/wwmr2010/ to see the list of the invited speakers, the titles of their talks, and all the details about the activities going on around the Conference.
Abstract submission ends May 31st and a number of poster abstracts will be selected for upgrade to short oral presentations. If you wish to be considered for an upgrade,...
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08-22-2010 02:30 AM
[NMR900 blog] World Wide Magnetic Resonance Conference 2010
World Wide Magnetic Resonance Conference 2010
Dear Colleague,
The WWMR2010 Conference (joint EUROMAR 2010 and 17th ISMAR Conference) in Florence (Italy, July 4th-9th) is approaching fast. Registered attendees are growing daily! Please visit http://www.cerm.unifi.it/wwmr2010/ to see the list of the invited speakers, the titles of their talks, and all the details about the activities going on around the Conference.
Abstract submission ends May 31st and a number of poster abstracts will be selected for upgrade to short oral presentations. If you wish to be considered for an upgrade,...
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08-22-2010 02:18 AM
Antifreeze Glycoprotein Activity Correlates with Long-Range Protein-Water Dynamics
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Simon Ebbinghaus et al
http://pubs.acs.org//appl/literatum/publisher/achs/journals/content/jacsat/0/jacsat.ahead-of-print/ja1051632/aop/images/medium/ja-2010-051632_0004.gifJournal of the American Chemical Society, Volume 0, Issue 0, Articles ASAP (As Soon As Publishable).
Source: Journal of the American Chemical Society